BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947816
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
ATCG01010.1 | Symbols: NDHF | NADH-Ubiquinone oxidoreductase (c... 1325 0.0
AT2G07600.1 | Symbols: | pseudogene, NADH dehydrogenase, blas... 798 0.0
AT1G21945.1 | Symbols: | transposable element gene | chr1:7717... 102 4e-21
> ATCG01010.1 | Symbols: NDHF | NADH-Ubiquinone oxidoreductase
(complex I), chain 5 protein | chrC:110398-112638 REVERSE LENGTH=2241
Length=2241
Score = 1325 bits (717), Expect = 0.0
Identities = 738/748 (99%), Gaps = 1/748 (0%)
Strand=Plus/Plus
Query 1 CATTTCTATTATTTGTAGGTCCTATTGCTAAATCCGCACAATTTCCTCTTCATGTATGGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 CATTTCTATTATTTGTAGGTCCTATTGCTAAATCCGCACAATTTCCTCTTCATGTATGGT 748
Query 61 TACCTGATGCCATGGAGGGCCCTACTCCCATTTCGGCTCTTATACATGCTGCTACTATGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TACCTGATGCCATGGAGGGCCCTACTCCCATTTCGGCTCTTATACATGCTGCTACTATGG 808
Query 121 TAGCGGCGGGGATTTTTCTTGTAGCTCGTCTTCTTCCTCTTTTTATAGTTATCCCTTCTA 180
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 809 TAGCGGCGGGTATTTTTCTTGTAGCTCGTCTTCTTCCTCTTTTTATCGTTATCCCTTCTA 868
Query 181 TAATGTATATAATATCTTTGATAGGTATAATAACAGTACTCTTAGGAGCCACTTTAGCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TAATGTATATAATATCTTTGATAGGTATAATAACAGTACTCTTAGGAGCCACTTTAGCTC 928
Query 241 TTGCTCAAAAAGACATTAAGCGAGGTTTAGCCTATTCTACAATGTCTCAACTGGGTTATA 300
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 929 TTGCTCAAAAAGACATTAAGCGGGGTTTAGCCTATTCTACAATGTCTCAACTCGGTTATA 988
Query 301 TGATATTAGCTCTAGGTATGGGGTCTTATCGATCTGCTTTATTTCATTTGATTACTCATG 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 TGATGTTAGCTCTAGGTATGGGGTCTTATCGATCTGCTTTATTTCATTTGATTACTCATG 1048
Query 361 CTTATTCGAAAGCTTTGTTGTTTTTAGGATCTGGATCCATTATTCATTCAATGGAAGCTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 CTTATTCGAAAGCTTTGTTGTTTTTAGGATCTGGATCCATTATTCATTCAATGGAAGCTA 1108
Query 421 TAGTTGGATATTCTCCCGATAAAAGTCAGAATATGATTCTTATGGGTGGTTTGACAAAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TAGTTGGATATTCTCCCGATAAAAGTCAGAATATGATTCTTATGGGTGGTTTGACAAAAC 1168
Query 481 ATGTCCCGATTACAAAAATGGCCTTTTTAATAGGAACACTCTCTCTTTGTGGTATTcccc 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1169 ATGTCCCGATTACAAAAACGGCCTTTTTAATAGGAACACTCTCTCTTTGTGGTATCCCCC 1228
Query 541 cccTTGCTTGTTTTTGGTCGAAAGATGAAATTCTTAATGATAGTTTGTTGTTTTCGCCAA 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1229 CCCTTGCTTGTTTTTGGTCGAAAGATGAAATTCTTAATGATAGTTTGTTATTTTCGCCAA 1288
Query 601 TTTTTGCAATAATAGCTTGTTCAACAGCGGGATTAACCGCATTTTATATGTTTCGGATTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 TTTTTGCAATAATAGCTTGTTCAACAGCGGGATTAACCGCATTTTATATGTTTCGGATTT 1348
Query 661 ATTTACTTACTTTTGAAGGACATTTAAACACTTATTTTCTAAATTACAGTGGaaaaaaaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 ATTTACTTACTTTTGAAGGACATTTAAACACTTATTTTCTAAATTACAGTGGAAAAAAAA 1408
Query 721 aGTAGCTCCTTCTATTCACTCTCTTTAT 748
|| ||||||||||||||||||||||||
Sbjct 1409 -GTGGCTCCTTCTATTCACTCTCTTTAT 1435
> AT2G07600.1 | Symbols: | pseudogene, NADH dehydrogenase, blastp
match of 71% identity and 8.1e-159 P-value to GP|17932795|emb|CAC85134.1||AJ312951
NADH dehydrogenase subunit F {Cassinopsis
ilicifolia} | chr2:3188396-3190016 REVERSE LENGTH=1621
Length=1621
Score = 798 bits (432), Expect = 0.0
Identities = 500/532 (94%), Gaps = 8/532 (2%)
Strand=Plus/Plus
Query 1 CATTTCTATTATTTGTAGGTCCTATTGCTAAATCCGCACAATTTCCTCTTCATGTATGGT 60
||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 458 CATTTCTCTTATTTGTAGGTCCTATTCCTAAATCCGCACAATTTCCTCTTCTTGTATGGT 517
Query 61 TACCTGATGCCATGGAGGGCCCTACTCCCATTTCGGCTCTTATACATGCTGCTACTATGG 120
||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |
Sbjct 518 TACCTGATGCCATGGAGGGTCCTAATCCCATTTCGTCTCTTATACATGCTGCTA--A--- 572
Query 121 TAGCGGCGGGGATTTTTCTTGTAGCTCGTCTTCTTCCTCTTTTTATAGTTATCCCTTCTA 180
|| | ||||| |||||| ||||||||| |||||| ||||||||||| ||||||| |||||
Sbjct 573 TAACAGCGGGTATTTTTGTTGTAGCTCATCTTCTCCCTCTTTTTATTGTTATCCGTTCTA 632
Query 181 TAATGTATATAATATCTTTGATAGGTATAATAACAGTACTCTTAGGAGCCACTTTAGCTC 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 633 TAATGTATATAATATCTTTGATATGTATAATAACAGTACTCTTAGGAGCCACTTTAGCTC 692
Query 241 TTGCTCAAAAAGACATTAAGCGAGGTTTAGCCTATTCTACAATGTCTCAACTGGGTTATA 300
||| ||||||||||| |||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 693 TTGTTCAAAAAGACA-TAAGCG-GGTTTAGCCTATTC-ACAATGTCTCAACTCGGTTATA 749
Query 301 TGATATTAGCTCTAGGTATGGGGTCTTATCGATCTGCTTTATTTCATTTGATTACTCATG 360
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 750 TGATGTTAGCTCTAGGTATGGGGTCTTATCGATCTGCTTTATTTCAATTGATTACTCATG 809
Query 361 CTTATTCGAAAGCTTTGTTGTTTTTAGGATCTGGATCCATTATTCATTCAATGGAAGCTA 420
||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 810 CTTATTCGAAAGCTTTGTTGTGTTTAAGATTTGGATCCATTATTCATTCAATGGAAGCTA 869
Query 421 TAGTTGGATATTCTCCCGATAAAAGTCAGAATATGATTCTTATGGGTGGTTTGACAAAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 TAGTTGGATATTCTCCCGATAAAAGTCAGAATATGATTCTTATGGGTGGTTTGACAAAAC 929
Query 481 ATGTCCCGATTACAAAAATGGCCTTTTTAATAGGAACACTCTCTCTTTGTGG 532
|||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 930 ATGTCCCGATTACAAAAACGGCCATTTTAATAGGAACACTCTCTCTTTGTGG 981
> AT1G21945.1 | Symbols: | transposable element gene | chr1:7717826-7722120
FORWARD LENGTH=4295
Length=4295
Score = 102 bits (55), Expect = 4e-21
Identities = 55/55 (100%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 355 CTCATGCTTATTCGAAAGCTTTGTTGTTTTTAGGATCTGGATCCATTATTCATTC 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 CTCATGCTTATTCGAAAGCTTTGTTGTTTTTAGGATCTGGATCCATTATTCATTC 1889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5