BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947820

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G39860.1 | Symbols: PRE1, BNQ1, BHLH136 | basic helix-loop-h...   536    4e-152


> AT5G39860.1 | Symbols: PRE1, BNQ1, BHLH136 | basic helix-loop-helix 
(bHLH) DNA-binding family protein | chr5:15957417-15958455 
FORWARD LENGTH=703
Length=703

 Score =  536 bits (290),  Expect = 4e-152
 Identities = 311/321 (97%), Gaps = 2/321 (1%)
 Strand=Plus/Plus

Query  2    TTTCTTGCCACATTGTTGAACATGTCGAACAGAAGATCAAGACAATCTTCAAGTGCTCCA  61
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  252  TTTCTTGCCACATTGTTGAACATGTCGAACAGAAGATCAAGGCAATCTTCAAGTGCTCCA  311

Query  62   AGGATCTCCGATGATCAAATGATTGACCTCGTAACTAAGCTCCGTCAAATTTTGCCGGAG  121
            |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  312  AGGATCTCCGATAATCAAATGATTGACCTCGTATCTAAGCTCCGTCAAATTTTGCCGGAG  371

Query  122  ATTGGCCAACGACGTCGTTCTGATAAGGTATCAGCGTCGAAAGTATTGCAAGAGACATGC  181
            ||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct  372  ATTGGTCAACGACGTCGTTCTGATAAGGCATCAGCCTCGAAAGTATTGCAAGAGACATGC  431

Query  182  AATTACATACGAAATTTGAACAGAGAAGTTGACAATCTCAGCGAGCGTTTGTCTCAGCTT  241
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  432  AATTACATACGAAATTTGAACAGAGAAGTTGACAATCTGAGCGAGCGTTTGTCTCAGCTT  491

Query  242  CTCGAATCTGTCGATGAAGATAGCCCTGAAGCCGCCGTTATTAGAAGCCTACTCATGTAA  301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  492  CTCGAATCTGTCGATGAAGATAGCCCTGAAGCCGCCGTTATTAGAAGCCTACTCATGTAA  551

Query  302  TCtttttt-ttgtttttgttt  321
            |||||||| || |||| ||||
Sbjct  552  TCTTTTTTGTTCTTTT-GTTT  571



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5