BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947840

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40090.1 | Symbols:  | Disease resistance protein (TIR-NBS c...   699    0.0  


> AT5G40090.1 | Symbols:  | Disease resistance protein (TIR-NBS 
class) | chr5:16041919-16043494 REVERSE LENGTH=1576
Length=1576

 Score =  699 bits (378),  Expect = 0.0
 Identities = 445/476 (93%), Gaps = 9/476 (2%)
 Strand=Plus/Plus

Query  8    CGAATGCCCTTGTTGCAATGGATCGTCACATGAAAGTGGTTTATGACTTGTTGGCTTTAG  67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  533  CGAATGCCCTTGTTGCAATGGATCGTCACATGAAAGTGGTTTATGACTTGTTGGCTTTAG  592

Query  68   AAGTTAACAAAGAGGTTCGTACCATTGGCATTTGGGGTAGTAGTATAAGGGTGTCGCAAA  127
            |||||||||||||||||||||| |||||||||||||||||| |  |   ||||| |    
Sbjct  593  AAGTTAACAAAGAGGTTCGTACAATTGGCATTTGGGGTAGT-G-CT---GGTGTTG----  643

Query  128  GGAAGACAACGTTTGCAAGGTACATTTATTCAGAGATGTTTGTTAACTTTCAGACATATG  187
            ||||||||||  ||||||||||||||||| ||||||| ||||| |||||||||||| |||
Sbjct  644  GGAAGACAACACTTGCAAGGTACATTTATGCAGAGATCTTTGTAAACTTTCAGACACATG  703

Query  188  TTTTCCTAGATAATGTTGAAAACATGAAAGACAAGCTTCTAAAGTTTGAAGGGGAAGAAG  247
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  704  TTTTCCTAGATAATGTTGAAAACATGAAAGACAAGCTTCTAAAGTTTGAAGGAGAAGAAG  763

Query  248  ATCCAACGGTAATAATAAGCTCATATCACGATGGGCATGAAATTAACGAAGCAAGGCGTA  307
            |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct  764  ATCCAACGGTAATAATAAGCTCATATCACGATGGACATGAAATTACCGAAGCAAGGCGTA  823

Query  308  AACACCGGAAAGTTCTCCTTATCGCTGATGATGTGAACAACATCGAACAAGGGAAGTGGA  367
            ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  824  AACACCGGAAAATTCTCCTTATCGCTGATGATGTGAACAACATGGAACAAGGGAAGTGGA  883

Query  368  TCATTGAATACGCTAACTGGTTTGCTCCAGGAAGCAGAATCATTCTTATTAGCCAGAACA  427
            |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  884  TCATTGAATATGCTAACTGGTTTGCTCCAGGAAGCAGAGTCATTCTTATTAGCCAGAACA  943

Query  428  AGAATATGCTTGTTGACGCCGGAGTGAAGCATGTGTATGAAGTCACATCTTTCAGA  483
            ||||| ||||||||||||||||||||| | ||||||| ||||||| |||||| |||
Sbjct  944  AGAATTTGCTTGTTGACGCCGGAGTGATGGATGTGTACGAAGTCAGATCTTTAAGA  999



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28985102819


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5