BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947841
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39740.1 | Symbols: OLI7, RPL5B | ribosomal protein L5 B | c... 1709 0.0
AT3G25520.1 | Symbols: ATL5, PGY3, OLI5, RPL5A | ribosomal prot... 1360 0.0
AT5G40130.1 | Symbols: | 60S ribosomal protein L5 (RPL5C), pse... 272 5e-72
> AT5G39740.1 | Symbols: OLI7, RPL5B | ribosomal protein L5 B |
chr5:15903296-15905464 FORWARD LENGTH=1254
Length=1254
Score = 1709 bits (925), Expect = 0.0
Identities = 1042/1098 (95%), Gaps = 9/1098 (1%)
Strand=Plus/Plus
Query 1 TCTTGCCTTCTTGTGTCACTCATCTTCACAGCAAACGATGGTGTTTGTGAAGTCCTCCAA 60
||||||| |||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 33 TCTTGCCATCTTTTGTCACTCATCTTCACAGGAAACAATGGTGTTTGTGAAGTCCTCCAA 92
Query 61 ATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGA-GGGAAAGA 119
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 93 ATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGATGGG-AAGA 151
Query 120 CTGATTACAGGGCAAGGATTCGTCTTATCAATCAAGATAAGAACAAGTACAACACGCCTA 179
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 152 CTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGAACAAGTACAACACCCCTA 211
Query 180 AGTACCGTTTTGTTGTCCGATTTACCAACAAAGACATCGTGGCACAGATTGTGTCTGCAA 239
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 212 AGTACCGTTTTGTTGTTCGATTTACCAACAAAGACATTGTGGCACAGATTGTATCTGCAA 271
Query 240 GTATAGCTGGTGACATTGTTAAAGCTTCTGCTTACGCACATGAGCTTCCTCAGTATGGAC 299
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 272 GCATAGCTGGTGACATTGTTAAAGCTTCGGCTTACGCACATGAGCTTCCTCAGTATGGAC 331
Query 300 TCACTGTTGGTCTTACCAACTATGCTGCAGCTTACTGTACTGGCCTTCTTTTGGCCCGTC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 332 TCACTGTTGGTCTTACCAACTATGCTGCAGCTTACTGTACTGGCCTTCTTTTGGCTCGTC 391
Query 360 GTGTTCTGAAAATGTTGGAAATGGATGACGAGTATGAGGGAAACGTAGAGGCCACTGGAG 419
|||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 392 GTGTTCTGAAAATGCTGGAAATGGATGATGAGTACGAGGGAAACGTAGAGGCCACTGGAG 451
Query 420 AGGACTTTTCTGTGGAACCAACGGATTCCAGAAGACCTTTCCGTGCTCTTCTTGATGTCG 479
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 452 AGGACTTTTCTGTGGAACCAACTGATTCCAGAAGACCTTTCCGTGCTCTTCTTGATGTTG 511
Query 480 GACTTATCAGGACCACAACGGGAAACCGTGTGTTTGGTGCTCTCAAGGGTGCTTTGGACG 539
||||||||||||| || || |||||||||||||||||||| |||||||| ||||||||||
Sbjct 512 GACTTATCAGGACTACCACTGGAAACCGTGTGTTTGGTGCACTCAAGGGAGCTTTGGACG 571
Query 540 GAGGTCTTGATATCCCACACAGTGACAAGAGATTTGCTGGTTTCAACAAAGAGAACAAGC 599
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 572 GAGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGTTTCCACAAAGAGAACAAGC 631
Query 600 AACTTGATGCTGAAATCCACAGGAACTACATCTATGGTGGCCATGTCTCAAACTACATGA 659
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 632 AACTTGATGCTGAAATCCACAGGAACTACATCTACGGTGGCCACGTCTCAAACTACATGA 691
Query 660 AGCTGTTGGGTGAAGATGAGCCAGAGAAGTTGCAAACTCACTTCAGTGCTTACATTAAGA 719
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 692 AGCTGTTGGGGGAAGATGAGCCGGAGAAGTTGCAAACTCACTTCAGTGCTTACATTAAGA 751
Query 720 AAGGAGTTGAAGCTGAGAGCATTGAGGAGATGTACAAGAAGGTTCACGCAGCTATTCGAG 779
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 752 AAGGAGTTGAAGCTGAGAGCATCGAGGAGATGTACAAGAAGGTTCACGCAGCTATCCGAG 811
Query 780 CAGACCCCAACCCTAAGAAAACCGAGAAACCTGCCCCCAAGGAACACAAGAGGTACAACT 839
|||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 812 CAGAACCCAACCATAAGAAAACCGAGAAATCTGCTCCCAAGGAACACAAGAGGTACAACT 871
Query 840 TGAAGAAACTGACTTATGAAGAGAGGAAGAACAAGTTGATCGAGAGAGTTAAGGCATTGA 899
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 872 TGAAGAAACTGACTTACGAAGAGAGGAAGAACAAGTTGATCGAGAGAGTGAAGGCATTAA 931
Query 900 ACGGAGCAGGTGGtgatgatgatgatgatgaggatgatgaAGAGTAAATCACCAATCCAG 959
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||
Sbjct 932 ACGGAGCAGGTGGTGATGATGATGATGA-G-G-ATGATGAAGAGTAAATCACCAATCAAG 988
Query 960 CCTCCTTTGTCT-ATTGCCTCTAGTAGCTATTTACTTGTGTT-TTTTCAGACCAAAACAC 1017
||| |||||||| || ||||||||||||| ||||||| | || ||||||||| |||||||
Sbjct 989 CCTTCTTTGTCTCAT-GCCTCTAGTAGCTTTTTACTTAT-TTATTTTCAGACTAAAACAC 1046
Query 1018 TCAGTTTTTGTTTTCAAATTTTAGTTGCGTTGGAAGATTTTGATTTCGAGGATATGTTTT 1077
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1047 TCAGTTTTTGTTTTCACATTTTAGTTGCGTTTGAAGATTTTGAATTCGAGGATATGTTTT 1106
Query 1078 CTTTGAAGAATTTATTAT 1095
|||||||||||||||||
Sbjct 1107 GTTTGAAGAATTTATTAT 1124
> AT3G25520.1 | Symbols: ATL5, PGY3, OLI5, RPL5A | ribosomal protein
L5 | chr3:9269293-9271390 REVERSE LENGTH=1249
Length=1249
Score = 1360 bits (736), Expect = 0.0
Identities = 983/1097 (90%), Gaps = 38/1097 (3%)
Strand=Plus/Plus
Query 32 CAAACGATGGTGTTTGTGAAGTCCTCCAAATCGAATGCTTACTTCAAGAGGTACCAAGTG 91
||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 58 CAAACAATGGTGTTTGTGAAGTCCACCAAGTCGAATGCTTACTTCAAGAGGTACCAAGTG 117
Query 92 AAGTTCAGGAGAAGGAGAGAGGGAAAGACTGATTACAGGGCAAGGATTCGTCTTATCAAT 151
|||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 118 AAGTTCAGGAGAAGAAGAGATGGAAAGACTGACTACAGGGCAAGGATCCGTCTTATCAAC 177
Query 152 CAAGATAAGAACAAGTACAACACGCCTAAGTACCGTTTTGTTGTCCGATTTACCAACAAA 211
||||| |||||||||||||| || |||||||| |||||||||||||| ||||||||||||
Sbjct 178 CAAGACAAGAACAAGTACAATACTCCTAAGTATCGTTTTGTTGTCCGGTTTACCAACAAA 237
Query 212 GACATCGTGGCACAGATTGTGTCTGCAAGTATAGCTGGTGACATTGTTAAAGCTTCTGCT 271
||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 238 GACATAGTGGCACAGATTGTATCTGCAAGCATTGCTGGTGACATTGTTAAAGCTTCTGCT 297
Query 272 TACGCACATGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGCT 331
||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 298 TACGCACATGAACTGCCTCAGTATGGTCTCACTGTTGGTCTTACAAACTATGCTGCAGCT 357
Query 332 TACTGTACTGGCCTTCTTTTGGCCCGTCGTGTTCTGAAA-ATGTTGGAAATGGATGACGA 390
||||||||||||||||||||||| || |||||| | ||| ||||||||||||||||||||
Sbjct 358 TACTGTACTGGCCTTCTTTTGGCTCGCCGTGTT-TTAAAGATGTTGGAAATGGATGACGA 416
Query 391 GTATGAGGGAAACGTAGAGGCCACTGGAGAGGACTTTTCTGTGGAACCAACGGATTCCAG 450
||||||||||||||| |||||||||||||| |||||||| || || ||||| ||||| ||
Sbjct 417 GTATGAGGGAAACGTTGAGGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAG 476
Query 451 AAGACCTTTCCGTGCTCTTCTTGATGTCGGACTTATCAGGACCACAACGGGAAACCGTGT 510
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 477 GAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTGT 536
Query 511 GTTTGGTGCTCTCAAGGGTGCTTTGGACGGAGGTCTTGATATCCCACACAGTGACAAGAG 570
||| |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 537 GTTCGGTGCTCTTAAGGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAG 596
Query 571 ATTTGCTGGTTTCAACAAAGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACTACAT 630
||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACTACAT 656
Query 631 CTATGGTGGCCATGTCTCAAACTACATGAAGCTGTTGGGTGAAGATGAGCCAGAGAAGTT 690
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 657 CTATGGTGGCCATGTCTCAAACTACATGAAGCTGTTGGGAGAAGATGAGCCAGAGAAGTT 716
Query 691 GCAAACTCACTTCAGTGCTTACATTAAGAAAGGAGTTGAAGCTGAGAGCATTGAGGAGAT 750
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 717 ACAAACTCACTTCAGTGCTTACATCAAGAAAGGAGTTGAAGCTGAGAGCATTGAGGAGTT 776
Query 751 GTACAAGAAGGTTCACGCAGCTATTCGAGCAGACCCCAACCCTAAGAAAACCGAGAAACC 810
||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||||
Sbjct 777 GTACAAGAAGGTTCACGCAGCTATTCGTGCTGACCCCAACCCAAAGAAAACCGTGAAACC 836
Query 811 TGCCCCCAAGGAACACAAGAGGTACAACTTGAAGAAACTGACTTATGAAGAGAGGAAGAA 870
||| |||||| |||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 837 TGCTCCCAAGCAACACAAGAGGTACAACTTGAAGAAACTTACTTACGAGGAGAGGAAGAA 896
Query 871 CAAGTTGATCGAGAGAGTTAAGGCATTGAACGGAGCAGGTGGtgatgatgatgatgatga 930
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 897 CAAGTTGATCGAGAGAGTCAAGGCATTGAATGGAGCAGGTGGTGATGATGATGATGA-G- 954
Query 931 ggatgatgaAGAGTAAATCACCAATCCAGCCTCCTTTGTCT-ATTGCCTCTAGTAGCTAT 989
| | |||||||||||||||| || ||||| |||| ||| || |||||| |||| | |
Sbjct 955 G-ACGATGAAGAGTAAATCAG---TCAAGCCTTCTTTATCTCAT-GCCTCTTGTAGTTTT 1009
Query 990 TTA-CTT--G---T----G--T----TTTT-T-----CAGACCAAAACACTCAGTTTTTG 1027
||| ||| | | | | |||| | ||||| ||||||||||| |||||
Sbjct 1010 TTATCTTTTGAGCTTAATGCCTCAAATTTTCTGTTTTCAGACTAAAACACTCAGCTTTTG 1069
Query 1028 TTTTCAAATTTTAGTTGCGTTGGAAGATTTTGAT-TTCGAGGATATGTTTTCTTTGAAGA 1086
| |||| |||||| ||| ||| || ||||||||| || ||||||| ||||||||||||
Sbjct 1070 TGTTCACATTTTAATTGTGTTCGAGGATTTTGATATT-GAGGATACATTTTCTTTGAAGT 1128
Query 1087 AT--TTAT-T-ATTATT 1099
|| |||| | ||||||
Sbjct 1129 ATCATTATCTTATTATT 1145
> AT5G40130.1 | Symbols: | 60S ribosomal protein L5 (RPL5C), pseudogene,
60S RIBOSOMAL PROTEIN L5, Arabidopsis thaliana, SWISSPROT:RL5_ARATH;
blastp match of 70% identity and 7.9e-26
P-value to GP|13359453|dbj|BAB33422.1||AB049724 putative senescence-associated
protein {Pisum sativum} | chr5:16053697-16054056
REVERSE LENGTH=360
Length=360
Score = 272 bits (147), Expect = 5e-72
Identities = 171/183 (93%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 656 ATGAAGCTGTTGGGTGAAGATGAGCCAGAGAAGTTGCAAACTCACTTCAGTGCTTACATT 715
|||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1 ATGAAGCTGTTGGGGGAATATGAGCCAGAGAAGTTACAAACTCTCTTCAGTGCTTACATT 60
Query 716 AAGAAAGGAGTTGAAGCTGAGAGCATTGAGGAGATGTACAAGAAGGTTCACGCAGCTATT 775
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 AAGAAAGGAGTTGAAGCTGAGAGCATCGAGGAGATGTACAAGAAGGTTCACGCAGCTATC 120
Query 776 CGAGCAGACCCCAACCCTAAGAAAACCGAGAAACCTGCCCCCAAGGAACACAAGAGGTAC 835
|||||||| ||||||| |||||||||||||||||| || |||||||||||||||||||
Sbjct 121 CGAGCAGAACCCAACCATAAGAAAACCGAGAAACCAGCTACCAAGGAACACAAGAGGTAA 180
Query 836 AAC 838
|||
Sbjct 181 AAC 183
Score = 135 bits (73), Expect = 7e-31
Identities = 92/101 (91%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 822 AACACAAGAGGTACAACTTGAAGAAACTGACTTATGAAGAGAGGAAGAACAAGTTGATCG 881
|||| || |||||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct 260 AACAAAACAGGTACGACTTGAAGAAACTGACGTACGAAGAGAGGAAGAACAAGTTGATCG 319
Query 882 AGAGAGTTAAGGCATTGAACGGAGCAGGTGGtga-tgatga 921
|||||||||||||||||||||||||| |||||| || |||
Sbjct 320 AGAGAGTTAAGGCATTGAACGGAGCATCTGGTGACTGGTGA 360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53865184785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5