BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947843
Length=556
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39720.1 | Symbols: AIG2L | avirulence induced gene 2 like p... 747 0.0
AT5G39730.1 | Symbols: | AIG2-like (avirulence induced gene) f... 422 2e-117
> AT5G39720.1 | Symbols: AIG2L | avirulence induced gene 2 like
protein | chr5:15899646-15900653 FORWARD LENGTH=661
Length=661
Score = 747 bits (404), Expect = 0.0
Identities = 512/563 (91%), Gaps = 12/563 (2%)
Strand=Plus/Plus
Query 1 AACGGTGGAAGAGACAAAAGATGAATTGCTCTG-GT-TC-TCAGCTTCATAATGTCTTTG 57
||||||||||||||| ||||||| | | || | | || ||||||||| |||||||| |
Sbjct 9 AACGGTGGAAGAGAC-AAAGATGTGTAGTTCCGATTCTCTTCAGCTTCACAATGTCTTCG 67
Query 58 TCTATGGTAGCTTTCAAGAGCCCGACGTCATCAACGTGATGCTTGACCGTATTCCTGAGA 117
||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||||||
Sbjct 68 TCTATGGTAGCTTTCAAGATCCCGACGTCATCAACGTCATGCTTGATCGTACTCCTGAGA 127
Query 118 TCGTCTCCGCAACACTCCCGGGCTTTCAGAGGTTTAGGATTAAAGGACGTTTGTATCCAT 177
| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 128 TAGTCTCCGCAACACTCCCGGGCTTTCAAAGGTTTAGGCTTAAAGGACGTTTGTATCCAT 187
Query 178 GTATTGTTCCCTCTGAGAAAGGAGAAGTTCATGGAAAGGTACTAATGGGATTAACAGGTG 237
|||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct 188 GTATTGTTCCTTCTGAGAAAGGAGAAGTTCATGGCAAGGTACTAATGGGAGTAACAAGTG 247
Query 238 ATGAACTTGAGAATATAGATGCGGTTGAGGGAAATGAATATGAGAGAGTGACTGTTGGGA 297
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 248 ATGAGCTTGAGAATTTAGATGCGGTTGAGGGAAATGAATATGAGAGAGTGACCGTCGGGA 307
Query 298 TTTTTAGGGAGGACACTTCGGAGAAGATGCCAGTGAAAACGTATATATGGATCAACAGGG 357
|| |||||||||||| ||||||||||||| |||||||||| ||||| |||||||||| ||
Sbjct 308 TTGTTAGGGAGGACAATTCGGAGAAGATGGCAGTGAAAACATATATGTGGATCAACAAGG 367
Query 358 CTGATCCTGACATGTTTGGAGAATGGGATTTTGAGGAATGGAAACGATTGCACAAAG-AG 416
|||||||||| ||||||||||||||| |||| |||||||||||||| |||||| ||| ||
Sbjct 368 CTGATCCTGATATGTTTGGAGAATGGAATTTCGAGGAATGGAAACGGTTGCAC-AAGAAG 426
Query 417 AAATTCATAGAGACTTTCAAGAAAATCATGGAATGTAAGAAGAAACCTCAGGGACAGG-A 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 427 AAATTCATAGAGACTTTCAAGAAAATCATGGAATGTAAGAAGAAACCTCAGGGACAGGGA 486
Query 476 AAGTGATGAT-TTCAGCCATGCCCTACGCGAAGATCAATCGGATGAGACTCCATTGTCCT 534
|| ||||||| || ||||||| ||||||||||||||||| |||| ||||||||| ||| |
Sbjct 487 AA-TGATGATATT-AGCCATGTCCTACGCGAAGATCAATAGGATAAGACTCCATCGTCTT 544
Query 535 G-AGTGGACTTGTGTTTTAGTAT 556
| | ||||||||||||| |||||
Sbjct 545 GGA-TGGACTTGTGTTTGAGTAT 566
> AT5G39730.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr5:15901679-15902870 FORWARD LENGTH=826
Length=826
Score = 422 bits (228), Expect = 2e-117
Identities = 387/464 (83%), Gaps = 10/464 (2%)
Strand=Plus/Plus
Query 37 CTCAGCTTCATAATGTCTTTGTCTATGGTAGCTTTCAAGAGCCCGACGTCATCAACGTGA 96
|||||||||| ||| |||| ||||||||||||||||||||||| ||| ||||| | || |
Sbjct 81 CTCAGCTTCACAATATCTTCGTCTATGGTAGCTTTCAAGAGCCTGACATCATCCATGTCA 140
Query 97 TGCTTGACCGTATTCCTGAGATCGTCTCCGCAACACTCCCGGGCTTTCAGAGGTTTAGGA 156
||||| | |||||||||||||| ||||| |||||||| || |||||| |||| ||||||
Sbjct 141 TGCTTAATCGTATTCCTGAGATTGTCTCTGCAACACTTCCTGGCTTTAAGAGATTTAGGC 200
Query 157 TTAAAGGACGTTTGTATCCATGTATTGTTCCCTCTGAGAAAGGAGAAGTTCATGGAAAGG 216
|||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 201 TTAAAGGACGTTTGTATCCATGTATTATCCCCTCTGAGAATGGAGAAGTTCATGGAAAGG 260
Query 217 TACTAATGGGATTAAC-AGGTGATGAACTTGAGAATATAGAT-GCGGTTGAGGGAAATGA 274
||||||||||||| || | |||||||||||||||| ||||| | |||||| ||||| ||
Sbjct 261 TACTAATGGGATTGACTAA-TGATGAACTTGAGAATGTAGATTG-GGTTGAAGGAAACGA 318
Query 275 ATATGAGAGAGTGACTGTTGGGATTTTTAGGGAG-GACACTTCGGAGAAGATGCCAGTGA 333
|||||| |||||| ||||| | || || | | |||| ||| ||||||||| ||||
Sbjct 319 ATATGAAAGAGTGTTTGTTGA-AGTTGTAAGAAAAGACAATTCTGAGAAGATGAGAGTGG 377
Query 334 AAACGTATATATGGATCAACAGGGCTGATCCTGACAT-GTTTGGAGAATGGGATTTTGAG 392
|||| ||| ||||||||||| | ||||||||| || | | |||||||||||||| |||
Sbjct 378 AAACATATCCATGGATCAACAAGAATGATCCTGATATTGGT-GGAGAATGGGATTTCGAG 436
Query 393 GAATGGAAACGATTGCACAAAGA-GAAATTCATAGAGACTTTCAAGAAAATCATGGAATG 451
|||||||||||||| |||| || || |||||||||| | |||| | | ||||||||| |
Sbjct 437 GAATGGAAACGATTACACAT-GAAGACATTCATAGAGGCGTTCACGGAGATCATGGAAAG 495
Query 452 TAAGAAGAAACCTCAGGGACAGGAAAGTGATGATTTCAGCCATG 495
|||| ||| || || ||| ||| || |||||||||||| |||
Sbjct 496 GAAGAGGAATCCACAAGGAAAGGGTAGAGATGATTTCAGCAATG 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26674332057
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5