BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947849
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39670.1 | Symbols: | Calcium-binding EF-hand family protei... 1016 0.0
> AT5G39670.1 | Symbols: | Calcium-binding EF-hand family protein
| chr5:15883179-15884067 FORWARD LENGTH=889
Length=889
Score = 1016 bits (550), Expect = 0.0
Identities = 619/651 (95%), Gaps = 10/651 (2%)
Strand=Plus/Plus
Query 8 TCTAACAAAAGTTATGACTGAAAACCAATTATATAGCTTTATAACCATGGAGAAGAGTTC 67
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 79 TCTAACAAAAGTTATGACTGAAAACCAATTATATAGCTTTATAACCAT---GAAGAGTTC 135
Query 68 ATTGTCTAAATGCAAACAGTCTTCTTCTTTTTCTTTCCCTTTGTTTGGTCTGATCAACTT 127
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 136 ATTGTCTAAATGCAAACAGTCTTCTTCTTTGTCTTTCCCTTTGTTTGGTCTGATCAACTT 195
Query 128 CTTCCTCATCGGTTTTTTCAGATGGGTTTCTTTTGCTCAGTCATTTTTCTCCAGGTTTTG 187
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 196 CTTCCTCATCGGTTTTTTCAGATGGGTTTCTTTTGCTCAGTTATTTTTCTCTAGGTTCTG 255
Query 188 GCCTCTTGTTCAACACCAGCAATGTGTTTCAGAGAAGAAGAGCAAAGATCTTGAGTTCCA 247
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 256 GCCTCTTGTTCAACACCAGCAATGTGTTTCCGAGAAGAAGAGCAAAGATCTTGAGTTCCA 315
Query 248 AACTTCGATCAAACACGAAGAATATC-----G-TGATGATGATGGTCTTTGTAGAGAAGA 301
|||||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 316 AACTTCGATCAAACACGAAGAATATCGTGATGATGATGATGATGGTCTTTGCAGAGAAGA 375
Query 302 TGTAGGGATGGTTATGAAGAGCTTAGGGCTTTCCACCGACCAAGAATGTGAGGGACTTCA 361
|||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct 376 TGTAGGGATGGTTATGAAAAGCTTAGGGCTTTCCACTGACCAAGAAAACGAGGGACTTCA 435
Query 362 AAAACAGTACAGTTCCGAGGAGCTTTCGAATCTGTTTGAAGAGAAAGAGCCGAGTTTGGA 421
|||||||||||||||| ||||| ||||||||||||| |||||||||||||| || || ||
Sbjct 436 AAAACAGTACAGTTCCAAGGAGGTTTCGAATCTGTTCGAAGAGAAAGAGCCAAGCTTAGA 495
Query 422 GGAAGTGAAGCAAGCTTTTGATGTCTTTGATGAAAACAGAGATGGGTTTATCGATCCAAT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 496 GGAAGTGAAGCAAGCTTTTGATGTCTTTGATGAAAACAGAGATGGGTTTATCGATCCTAT 555
Query 482 AGATTTGCAGAGAGTTTTGACAATCCTTGGCTTAAAGCAAGGTTCTAACCTTGAGAATTG 541
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 556 AGATTTGCAGAGAGTTTTGACAATCCTTGGCTTAAAGCAAGGATCTAACCTTGAGAACTG 615
Query 542 CAGGAGAATGATCAGATCATTCGATGGAAATAAAGACGGAAGAATCGATTTCTATGGATT 601
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 616 CAGGAGAATGATCAGATCATTCGATGGAAGTAAAGACGGAAGAATCGATTTCTATGGATT 675
Query 602 TGTGAAATTCATGGAGAACAACTTCTGCTGAAATCGTATTTCCTCAA-GTA 651
|||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 676 TGTGAAATTCATGGAGAACAACTTCTGCTGAAATCGTATTTCCTTAAAGTA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31496810169
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5