BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947850
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39660.1 | Symbols: CDF2 | cycling DOF factor 2 | chr5:15878... 1903 0.0
AT1G47655.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 54.7 2e-06
> AT5G39660.1 | Symbols: CDF2 | cycling DOF factor 2 | chr5:15878699-15881023
FORWARD LENGTH=1906
Length=1906
Score = 1903 bits (1030), Expect = 0.0
Identities = 1323/1457 (91%), Gaps = 49/1457 (3%)
Strand=Plus/Plus
Query 1 AAGTGAAAAAAGAATCATT--CATGGCTGATCCGGCGATTAAGCTCTTTGGGAAGACGAT 58
||||| |||| |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 201 AAGTG-AAAAGGAATCATTACCATGGCTGATCCGGCGATTAAGCTCTTTGGAAAGACGAT 259
Query 59 TCCTTTACCTGAGCTTGCTGTTGTTGTTGATTCCTGTTCTAGCTATACCGGAGTTTTAAC 118
||||||||||||||||| | |||||||||||| | |||||||||||||||| |||||||
Sbjct 260 TCCTTTACCTGAGCTTG--G-TGTTGTTGATTCTTCTTCTAGCTATACCGGATTTTTAAC 316
Query 119 CGAAACTCAAGATCAGAATCTTGTTCGGTTATCAGATTCGTGTACC-G-GA-gatgatga 175
|||||||| |||| || ||||||||||||||||||||||||| | || ||||||||
Sbjct 317 CGAAACTC-AGAT-----TCCTGTTCGGTTATCAGATTCGTGTACCGGCGATGATGATGA 370
Query 176 tgatgagatgggtcg-ttccggtttaggaggaggtgatgatgatgttggtggtgatgGTT 234
||| ||||||||| | ||||||||||||| ||| || | ||||| || ||||||
Sbjct 371 TGAAGAGATGGGT-GATTCCGGTTTAGGACGAGAAGAAGGTGATGATGTTGGTGA----- 424
Query 235 CTCGTGTTGGAGGAGAGAGCGAGAGTGATAAAAAGGAAGaaaaaaaTAATGAGTGTCAGG 294
| | | ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||
Sbjct 425 -T-G-G-TGGAGGAGAGAGCGAGACTGATAAAAAGGAAGAAAAAGATAGTGAGTGTCAGG 480
Query 295 AAGAGTCATTGAGGCATGAATCTAATGATGTTACTACTAATACTACATCGGGTATAACTG 354
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 AAGAGTCATTGAGGAATGAATCTAATGATGTTACTAC---TACTACATCGGGTATAACTG 537
Query 355 AAAAAACGGAGACTACAAAGGCTGGGAAGACGAATGAAGAGTCGTCACAGAATGAGACGG 414
|||||||||| || ||||| |||| |||||||||||||| || | | |
Sbjct 538 AAAAAACGGAAACAACAAAAGCTGCAAAGACGAATGAAGA---GT--C--------A--G 582
Query 415 GTGGTACTGCTTGCTCTCAAGAGGCTAAGCTAAAGAAACCCGACAAGATTCTGCCGTGCC 474
|||||||||||||||||||||||| ||| |||||||||| || |||||||| ||||| |
Sbjct 583 GTGGTACTGCTTGCTCTCAAGAGGGGAAGTTAAAGAAACCTGATAAGATTCTACCGTGTC 642
Query 475 CGCGATGTAGTAGCATGGAAACCAAGTTCTGTTACTACAACAACTATAATGTTAACCAAC 534
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CGCGATGTAACAGCATGGAAACCAAGTTCTGTTACTACAACAACTATAATGTTAACCAAC 702
Query 535 CTCGCCATTTCTGCAAGAAATGTCAGAGGTATTGGACAGCTGGTGGAACGATGAGGAATG 594
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 703 CTCGCCATTTCTGCAAGAAATGTCAGAGATATTGGACAGCTGGTGGAACGATGAGGAATG 762
Query 595 TTCCGGTTGGTGCAGGGAGACGCAAGAATAAGAGTCCGGCTTCTCATTATAACCGTCATG 654
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 763 TTCCGGTTGGTGCTGGGAGACGTAAGAATAAGAGTCCAGCTTCTCATTATAACCGTCATG 822
Query 655 TAAGCATAACATCTGCGGAAGCTATGCAGAAGGCGGCGAGAACCGATCTTCAAAATCCTA 714
|||| |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||
Sbjct 823 TAAGTATAACATCTGCGGAAGCTATGCAGAAGGTGGCGAGAACTGATCTTCAACATCCTA 882
Query 715 ATGGTGCAAATCTTCTCACTTTTGGCTCTGATTCGGTGCTCTGTGAATCAATGGCTTCGG 774
|||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
Sbjct 883 ATGGTGCAAATCTTCTCACTTTTGGCTCTGATTCTGTGCTTTGTGAATCTATGGCTTCTG 942
Query 775 GATTGAATCTTGCTGAGAAGTCAATGTTGAAGACACAAACTGTGTTGCAAGAACCCATTG 834
|||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 943 GATTGAATCTTGTTGAGAAGTCATTGTTGAAGACACAAACTGTATTGCAAGAACCCAATG 1002
Query 835 AAGGTTTGAAGATTACGGTTCCTTTAAACCCGTCAAACGAAGAGGCCGGAACAGTCAGCC 894
|||| ||||||||||||||||| ||||||| | |||||||||| || |||||||||||||
Sbjct 1003 AAGGCTTGAAGATTACGGTTCCGTTAAACCAGACAAACGAAGAAGCTGGAACAGTCAGCC 1062
Query 895 CATTACCAAAAGTTCCATGCTTTCCAGGACCACCACCACCAGCTTGGCCATACGCTTGGA 954
| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 1063 CGTTACCAAAAGTTCCATGCTTTCCAGGACCACCACCA--A-CTTGGCCTTACGCTTGGA 1119
Query 955 ACGGAGTTTCATGGACGGTTTTACCGTTTTATCCTCCACCTGCTTACTGGAGCTGCCCGG 1014
|||||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1120 ACGGAGTTTCGTGGACGATTTTACCGTTTTACCCTCCACCGGCTTACTGGAGCTGCCCGG 1179
Query 1015 GGGTTTCACCGGGGACATGGAACAGCTTCACCTGGATGCCACAACCCAATTCACCATCTG 1074
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1180 GGGTTTCACCGGGGGCATGGAACAGCTTCACATGGATGCCACAACCCAATTCACCATCTG 1239
Query 1075 GGTCTGGTCCAAATTCTCCTACACTAGGTAAACATTCCCGTGATGAGAACGCTGCTGAAC 1134
| || |||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1240 GTTCCAATCCAAATTCTCCTACACTAGGTAAACATTCACGTGACGAGAACGCTGCTGAAC 1299
Query 1135 CAGGAGCCACTTTCGAAGAAACCGAGTCACTTGGTAGAGAGAAAAGCAAACCGGAGAGAT 1194
||||| || |||| || |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1300 CAGGAACCGCTTTTGATGAAACCGAGTCACTTGGTAGGGAGAAAAGCAAACCCGAGAGAT 1359
Query 1195 GCTTGTGGGTTCCCAAGACGCTGAGGGTCGATGATCCAGAGGAAGCTGCTAAAAGTTCAA 1254
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 1360 GCTTGTGGGTTCCCAAGACGCTGAGGATTGATGATCCAGAGGAAGCTGCTAAAAGTTCCA 1419
Query 1255 TCTGGGAAACATTAGGGATCAAAAAAGACGAAAATGCGGATACTTTCGGAGCTTTTAGAT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1420 TCTGGGAAACATTAGGGATCAAAAAAGACGAAAATGCGGATACTTTCGGAGCTTTCAGAT 1479
Query 1315 CATCAACCAAAGAAAAAAGCAGTCTTTCTGAAGGAAAACTTCCGGGAAGACGAGCGGAGT 1374
|||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 1480 CATCAACCAAAGAAAAAAGCAGTCTTTCTGAAGGAAGACTTCCGGGAAGAAGACCGGAGT 1539
Query 1375 TGCAAGCAAATCCTGCTGCTCTTTCTAGGTCAGCAAACTTCCATGAGAGCTCATAAAAAG 1434
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1540 TGCAAGCGAATCCTGCTGCTCTTTCTAGGTCAGCAAACTTCCATGAGAGCTCATAGAAAG 1599
Query 1435 GAGA-GAAATTTAAGCA 1450
||| ||| | ||||||
Sbjct 1600 AAGAAGAA-TCTAAGCA 1615
> AT1G47655.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:17525365-17526306 FORWARD LENGTH=942
Length=942
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 495 ACCAAGTTCTGTTACTACAACAACTATAA 523
|||||||||||||||||||||||||||||
Sbjct 187 ACCAAGTTCTGTTACTACAACAACTATAA 215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71485576080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5