BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947855

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G39600.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Ribosomal...   665    0.0  


> AT5G39600.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Ribosomal 
protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast 
hits to 50 proteins in 19 species: Archae - 0; Bacteria 
- 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other 
Eukaryotes - 2 (source: NCBI BLink). | chr5:15853929-15855192 
REVERSE LENGTH=781
Length=781

 Score =  665 bits (360),  Expect = 0.0
 Identities = 396/414 (96%), Gaps = 0/414 (0%)
 Strand=Plus/Plus

Query  1    GTGTTTGATATCGAAAGAAGATGTTGAAGTTTCTATCAAAAGTAAGAGTTGAGTACAACA  60
            |||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct  119  GTGTTTGATATCTAAAGAAGATGTTGAAGTTTCTATCAAAAGTAAGAATTGAGTTCAACA  178

Query  61   CATTGGATCCAAGACTTGCGTCTTGTGTTGAATTCTTAGCTCAATGCAATGCAAGGAAGG  120
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  CATTAGATCCAAGACTTGCGTCTTGTGTTGAATTCTTAGCTCAATGCAATGCAAGGAAGG  238

Query  121  CCAAAGAGTCGAATCCAAATTGTCAGGTTTTGGTGAAACGTAGAACTGATGAACAGCCGC  180
            ||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct  239  CCAAAGAATCGAATCCCAATTGTCAGGTTTTGGTGAAACGTAGAACCGATGAGCAGCCGC  298

Query  181  CGCAGATTACTGTCACGTTTGTTAATGGTGTTGAGGAAGCTTTTGATGCAGCTGCAACAT  240
            ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct  299  CGCAGATCACTGTCACTTTTGTTAATGGTGTTGAGGAAGCTTTTGATGCAGCTGCAACCT  358

Query  241  CGGCTCAGTCGATTAGAAAGATGATTCTTGATAAAGGTCAGTATCTTGAGACAGAGCAAA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  CGGCTCAGTCGATTAGAAAGATGATTCTTGATAAAGGTCAGTATCTTGAGACAGAGCAAA  418

Query  301  TGTTCCGTGAAGCCGGTGAACAATGGCCTGTGATTATCCCTGATGAAGAACTTCTCCAAG  360
            |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  419  TGTTTCGTGAAGCTGGAGAACAATGGCCTGTGATTATCCCTGATGAAGAACTTCTCCAAG  478

Query  361  AGGCTCCTGGTGTGAAGCCGAGAAAAGCAGAGGACAAGAAGTAATGCTGCGCCA  414
            ||||||||||||| ||||||||||||||||| |||||||||| ||||||| |||
Sbjct  479  AGGCTCCTGGTGTTAAGCCGAGAAAAGCAGAAGACAAGAAGTGATGCTGCACCA  532



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20107099600


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5