BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947859
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39560.1 | Symbols: | Galactose oxidase/kelch repeat superf... 569 2e-161
> AT5G39560.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:15841692-15843169 REVERSE LENGTH=1478
Length=1478
Score = 569 bits (308), Expect = 2e-161
Identities = 550/662 (83%), Gaps = 36/662 (5%)
Strand=Plus/Plus
Query 4 TACTATTTCCGGCGACCATGATCTCCGAAGTTGAACTACCGCAGAAAGAGAAGAGAAATT 63
||| |||||||||||||||||||||||||||||||| | | || ||||||||||||| ||
Sbjct 81 TACCATTTCCGGCGACCATGATCTCCGAAGTTGAAC-AAC-CA-AAAGAGAAGAGAAGTT 137
Query 64 TGAGTTCTGAACCACCGTCGTT-TTCATCGCTCCCAGACGAAATCATAGAGAACATTCTT 122
|||||||||| ||||||||||| | || |||||| |||||||||||||||||||||||
Sbjct 138 TGAGTTCTGAGCCACCGTCGTTGAT-GTCACTCCCATACGAAATCATAGAGAACATTCTT 196
Query 123 GCACGTATCTCTAAATGGACTTACCCTAAtctctctctcgtctccaaaacattcctctct 182
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||
Sbjct 197 GCACGTATCTCTAAATGGAGTTATCCTAATCTCTCTCTCGTCTCCAAAAGTTTCCTTTCT 256
Query 183 cttctctctTCCCCGCAACTATACAAGACGCGATCTCACATCGGAACCACCGAACCATGC 242
|||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 257 CTTCTCTCTTCCCCGCAACTATACAAGACGCGATCTGAAATCGGAACCACCGAGCCATGC 316
Query 243 CTCTATCTCTGCTTAAAA-CTGCGTTATGATTCATCTCATCCCCAATGGTTTACTCTTTG 301
|||||| ||||||| || | || | | ||||||||| | | | |||| ||||||||
Sbjct 317 CTCTATTTCTGCTTGGAATCAGC-TAACCATTCATCTC--CAC-AGTGGTACACTCTTTG 372
Query 302 GATGAAACCTGATGAAAACCTCACCAGTAACGGCGAGACTATGCATGACTATTCGTTGAT 361
||||||||||||||||| ||||||| ||| ||| | |||| |||||||||||||||||
Sbjct 373 GATGAAACCTGATGAAACCCTCACCGGTACCGGT-A--CTATACATGACTATTCGTTGAT 429
Query 362 TCCGCTACACTCTTCTTCCTATTCTTCACCCGTACTATA-TAAGAATTCCACCGTATCTG 420
|||||||| || | | || | | | ||| ||||| | || | | |||| ||| | |
Sbjct 430 TCCGCTAC-CT-T-CGTC-T-T-C---ACCAGTACT-TCGTAC-A-T-CCACGGTAGCGG 476
Query 421 TTGGTTCGGAAATCTACGTAATCGGTGGACTCCTCCAGGCTCCGTCTTCTTCTGTTCGGA 480
|||||||||||||||||||||||||||||| | || | | | ||||| || |||||||
Sbjct 477 TTGGTTCGGAAATCTACGTAATCGGTGGACACTTCAAC-CGC--TCTTCCTCAGTTCGGA 533
Query 481 TCCTTGATTGTCGGATTCACATGTGGCGTGATGGGCCTAACATGACGGTAGCTCGATCCG 540
| |||||||||||| | ||| ||||||||| || ||||||||||||||||||||||| |
Sbjct 534 TATTTGATTGTCGGAGTAACACGTGGCGTGACGGTCCTAACATGACGGTAGCTCGATCGG 593
Query 541 AGCCAACCACTGTT-TACCTCGATGAGAAAATATATGTCATAGGAGGTTGCAAGAATG-A 598
| ||| | | ||| | | |||| ||| |||||| ||| | |||||| || ||| || |
Sbjct 594 ATCCAGTCGCGGTTCT-CATCGACCAGAGAATATACGTCTTGGGAGGTCGCGAGA-TGGA 651
Query 599 TGAGTCT-ACCAATTGGTTAGAGATATTCGACATAAAGACTCAGTCTTGGAGAGCTTTGC 657
|||||| || | |||||| ||| | |||||||| ||||||||| |||||||||| ||||
Sbjct 652 CGAGTCTGACGA-TTGGTTTGAGGTGTTCGACATCAAGACTCAGACTTGGAGAGCCTTGC 710
Query 658 CT 659
||
Sbjct 711 CT 712
Score = 215 bits (116), Expect = 9e-55
Identities = 351/456 (77%), Gaps = 50/456 (11%)
Strand=Plus/Plus
Query 710 TGCTTTTAAAGGAAAGCTTTACGTAGCGGCAGAGACAAAAGACTACACTTACGAGCCCAA 769
|||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 823 TGCTTTGGAAGGAAAGCTTTACGTAGCGGCACAGATAAATGACTACACTTACGAGCCCAA 882
Query 770 AGATGGTACATGGAATGTCGTAAGAGAGAAATCGA-TATTCA-AAGA-TATAAGACATTG 826
||||| ||||||||| || || | || ||||| | || | | |||| || ||| |||
Sbjct 883 AGATGATACATGGAAAGTTGT-A-AG-CAAATCAAGTA-TAAGAAGAGTA-AAG-GTTTG 936
Query 827 GTGTGTGATAGAGGATGTAATGTACTCTTG-CACTTACGTTGGGTCTT-TAATGTGGTAT 884
||||||||||||| ||||||||||| |||| || | ||| | | || | | |||||||
Sbjct 937 GTGTGTGATAGAGAATGTAATGTACGCTTGCCA-TGACG-T--CT-TTCTGAGGTGGTAT 991
Query 885 GACTT-TGAGGGTAGA-GAGTGGAGAGAGATCAAGGGTTT-GAACGAATTTAATG-T-CG 939
|| || |||| |||| | ||||||||||||| ||||||| ||| ||| || || | |
Sbjct 992 GA-TTACGAGGATAGACG-GTGGAGAGAGATCCAGGGTTTGGAA-GAA-TT-GTGTTACC 1046
Query 940 GCCTTAC-ATGGTATTTAAAAAAGAGGTCTGTCCATGGAATAGTTAACTATGGTGGGAAA 998
|| ||| | || ||| | | || | | | |||||||||||||||||||||||
Sbjct 1047 ACCCTACGA-GGGGTTT--CAGTG-GGGC-G--GAAAGAATAGTTAACTATGGTGGGAAA 1099
Query 999 CTTGTAGTTATATGGAGGCAG-TGGTATAATGATGACGGCAAAGGATGGAATACTAAAGT 1057
||||||||||| ||| | | | || | || | ||||| |||| || ||| ||| |
Sbjct 1100 CTTGTAGTTATGTGGCGTCCGGTGC-A-AA-GC-GACGGAAAAG-ATAAAATTG-AAATT 1153
Query 1058 TGAGT-T-CTCTAAGATTGCATTAGAGAAGCGCCA-TAAAGATGAGATTTGGGGTAAGAC 1114
|| || | ||| | |||||| |||||||||||| | |||||||||||| ||||||||||
Sbjct 1154 TG-GTGTGCTC-A-GATTGCGTTAGAGAAGCGC-AGTAAAGATGAGATCTGGGGTAAGAT 1209
Query 1115 GGAGTGGGTTAATACTGTGCCTGA-GATCCCCAAGT 1149
|||||| ||||| |||||| | | | |||||||||
Sbjct 1210 AGAGTGGATTAATTCTGTGCTT-ACGGTCCCCAAGT 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59035840920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5