BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947861
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39560.1 | Symbols: | Galactose oxidase/kelch repeat superf... 435 6e-121
> AT5G39560.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:15841692-15843169 REVERSE LENGTH=1478
Length=1478
Score = 435 bits (235), Expect = 6e-121
Identities = 478/590 (81%), Gaps = 38/590 (6%)
Strand=Plus/Plus
Query 63 GTCGTTCTTGTCACTCCCGGATGAAATCATAGAGAATATTCTTGCACGCATCTCTAAATG 122
|||||| |||||||||| | |||||||||||||| ||||||||||| |||||||||||
Sbjct 154 GTCGTTGATGTCACTCCCATACGAAATCATAGAGAACATTCTTGCACGTATCTCTAAATG 213
Query 123 GACTTACCCTAAtctctctctcgtctccaagagattcctctat-ttcctctcttctccta 181
|| ||| ||||||||||||||||||||||| || ||||| | | || |||||||| ||
Sbjct 214 GAGTTATCCTAATCTCTCTCTCGTCTCCAAAAGTTTCCTTTCTCTT-CTCTCTTC-CCCG 271
Query 182 c-tctATACAAGACTCGATCTCACATCGGAACCACCGAACCATGCCTCTATTTCTTCTT- 239
| ||||||||||| |||||| | |||||||||||||| |||||||||||||||| |||
Sbjct 272 CAACTATACAAGACGCGATCTGAAATCGGAACCACCGAGCCATGCCTCTATTTCTGCTTG 331
Query 240 AAAACTGCGTTATAATTCATCTGATCCCCAATGGTTTACTCTTTGGATGAAACCTGATGA 299
|| | || | | ||||||| ||| || |||| |||||||||||||||||||||||
Sbjct 332 GAATCAGC-TAACCATTCATC---TCCACAGTGGTACACTCTTTGGATGAAACCTGATGA 387
Query 300 AAACCTCACCAGTAACGGCGAG-ACTATGCATGACTATTCGTCGATTCCGCTACACTCTT 358
|| ||||||| || || || | ||||| ||||||||||||| ||||||||| | |
Sbjct 388 AACCCTCACCGGT-AC--CG-GTACTATACATGACTATTCGTTGATTCCGCT--A--C-- 437
Query 359 CTTCCTATTCTTCACCCGTACCAT-ATA-AGTCCACCGTCGCCGTTGGTTCGGAAATCTA 416
||| | |||||||| ||| | | || | ||||| || || |||||||||||||||||
Sbjct 438 CTT-C--GTCTTCACCAGTA-CTTCGTACA-TCCACGGTAGCGGTTGGTTCGGAAATCTA 492
Query 417 CTTAATCGGTGGAATC-CCGGAGGCTCCG-TCTTCTTCTGTTCGGATCCTTGATTGTCGG 474
| |||||||||| | | | | ||| ||||| || |||||||| |||||||||||
Sbjct 493 CGTAATCGGTGG-A-CACTTCA---ACCGCTCTTCCTCAGTTCGGATATTTGATTGTCGG 547
Query 475 ATTCACACATGGCGTGACGGGCCAAACATGACGGTAGCTCGATCGGATCCAGTAGCAGTT 534
| | |||| ||||||||||| || ||||||||||||||||||||||||||||| || |||
Sbjct 548 AGTAACACGTGGCGTGACGGTCCTAACATGACGGTAGCTCGATCGGATCCAGTCGCGGTT 607
Query 535 -TACCTCGATGAGAAAATATACGTCATAGGAGGTTGTGGGAATG-ATGAGTCTGCCAATT 592
| | |||| ||| |||||||||| | |||||| | | || || | ||||||| | |||
Sbjct 608 CT-CATCGACCAGAGAATATACGTCTTGGGAGGTCGCGAGA-TGGACGAGTCTGACGATT 665
Query 593 GGTTAGAGGTATTCGACATAAAGACTCAGACTTGGAGAGCTTTGCCTAGT 642
|||| ||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 666 GGTTTGAGGTGTTCGACATCAAGACTCAGACTTGGAGAGCCTTGCCTAGT 715
Score = 254 bits (137), Expect = 2e-66
Identities = 368/471 (78%), Gaps = 50/471 (11%)
Strand=Plus/Plus
Query 676 ATTAAAGTCAACCCCAATGCTTTTAAAGGCAAGCTTTACGTAGCGGCAGAGACAAAAGAC 735
||||| ||||||||||||||||| |||| |||||||||||||||||| ||| ||| |||
Sbjct 806 ATTAACGTCAACCCCAATGCTTTGGAAGGAAAGCTTTACGTAGCGGCACAGATAAATGAC 865
Query 736 TACACTTACGAGCCCAAAGATGGTACATGGAATGTCGTAAGAGAGAAATCGA-TATTCA- 793
|||||||||||||||||||||| ||||||||| || || | || ||||| | || | |
Sbjct 866 TACACTTACGAGCCCAAAGATGATACATGGAAAGTTGT-A-AG-CAAATCAAGTA-TAAG 921
Query 794 AAGA-TATAAGATATTGGTGTGTGATAGAGGATGTAATGTACTCTTG-CACTTACGTTGG 851
|||| || ||| | |||||||||||||||| ||||||||||| |||| || | ||| |
Sbjct 922 AAGAGTA-AAGGT-TTGGTGTGTGATAGAGAATGTAATGTACGCTTGCCA-TGACG-T-- 975
Query 852 GTCTT-TAATGTGGTATGACT-CTGAGGGTAGA-GAGTGGAGAGAGATAAAGGGTTTGGA 908
| || | | ||||||||| | | |||| |||| | |||||||||||| ||||||||||
Sbjct 976 CT-TTCTGAGGTGGTATGATTAC-GAGGATAGACG-GTGGAGAGAGATCCAGGGTTTGGA 1032
Query 909 CGAATTTACTG-T-CTGCCTTAC-ATCGTATTTAAAAAGGATGTATGTC-CATGGAATAG 964
||| || || | | || ||| | | ||| | | || | | | ||||||
Sbjct 1033 AGAA-TT-GTGTTACCACCCTACGA-GGGGTTT---CA-G-TG--GGGCGGAAAGAATAG 1082
Query 965 TTAACTATGGTGGGAAACTTGTAGTTATGTGGAGGCAG-TGGTATAATGAAGACGGCAAA 1023
|||||||||||||||||||||||||||||||| | | | || | || | ||||| |||
Sbjct 1083 TTAACTATGGTGGGAAACTTGTAGTTATGTGGCGTCCGGTGC-A-AA-GC-GACGGAAAA 1138
Query 1024 GGACGGAAAATT-AAAGTTGG-GTTCTCTAAGATTGCGTTAGAGAAGCGCCA-TAAAGAT 1080
| | |||||| ||| |||| || ||| | ||||||||||||||||||| | |||||||
Sbjct 1139 G-AT--AAAATTGAAATTTGGTGTGCTC-A-GATTGCGTTAGAGAAGCGC-AGTAAAGAT 1192
Query 1081 GAGATTTGGGGTAAGACGGAGTGGGTTAATACTGTGCTTGA-GATCCCCAA 1130
||||| |||||||||| |||||| ||||| |||||||| | | |||||||
Sbjct 1193 GAGATCTGGGGTAAGATAGAGTGGATTAATTCTGTGCTT-ACGGTCCCCAA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5