BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947861 Length=1185 Score E Sequences producing significant alignments: (Bits) Value AT5G39560.1 | Symbols: | Galactose oxidase/kelch repeat superf... 435 6e-121 > AT5G39560.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:15841692-15843169 REVERSE LENGTH=1478 Length=1478 Score = 435 bits (235), Expect = 6e-121 Identities = 478/590 (81%), Gaps = 38/590 (6%) Strand=Plus/Plus Query 63 GTCGTTCTTGTCACTCCCGGATGAAATCATAGAGAATATTCTTGCACGCATCTCTAAATG 122 |||||| |||||||||| | |||||||||||||| ||||||||||| ||||||||||| Sbjct 154 GTCGTTGATGTCACTCCCATACGAAATCATAGAGAACATTCTTGCACGTATCTCTAAATG 213 Query 123 GACTTACCCTAAtctctctctcgtctccaagagattcctctat-ttcctctcttctccta 181 || ||| ||||||||||||||||||||||| || ||||| | | || |||||||| || Sbjct 214 GAGTTATCCTAATCTCTCTCTCGTCTCCAAAAGTTTCCTTTCTCTT-CTCTCTTC-CCCG 271 Query 182 c-tctATACAAGACTCGATCTCACATCGGAACCACCGAACCATGCCTCTATTTCTTCTT- 239 | ||||||||||| |||||| | |||||||||||||| |||||||||||||||| ||| Sbjct 272 CAACTATACAAGACGCGATCTGAAATCGGAACCACCGAGCCATGCCTCTATTTCTGCTTG 331 Query 240 AAAACTGCGTTATAATTCATCTGATCCCCAATGGTTTACTCTTTGGATGAAACCTGATGA 299 || | || | | ||||||| ||| || |||| ||||||||||||||||||||||| Sbjct 332 GAATCAGC-TAACCATTCATC---TCCACAGTGGTACACTCTTTGGATGAAACCTGATGA 387 Query 300 AAACCTCACCAGTAACGGCGAG-ACTATGCATGACTATTCGTCGATTCCGCTACACTCTT 358 || ||||||| || || || | ||||| ||||||||||||| ||||||||| | | Sbjct 388 AACCCTCACCGGT-AC--CG-GTACTATACATGACTATTCGTTGATTCCGCT--A--C-- 437 Query 359 CTTCCTATTCTTCACCCGTACCAT-ATA-AGTCCACCGTCGCCGTTGGTTCGGAAATCTA 416 ||| | |||||||| ||| | | || | ||||| || || ||||||||||||||||| Sbjct 438 CTT-C--GTCTTCACCAGTA-CTTCGTACA-TCCACGGTAGCGGTTGGTTCGGAAATCTA 492 Query 417 CTTAATCGGTGGAATC-CCGGAGGCTCCG-TCTTCTTCTGTTCGGATCCTTGATTGTCGG 474 | |||||||||| | | | | ||| ||||| || |||||||| ||||||||||| Sbjct 493 CGTAATCGGTGG-A-CACTTCA---ACCGCTCTTCCTCAGTTCGGATATTTGATTGTCGG 547 Query 475 ATTCACACATGGCGTGACGGGCCAAACATGACGGTAGCTCGATCGGATCCAGTAGCAGTT 534 | | |||| ||||||||||| || ||||||||||||||||||||||||||||| || ||| Sbjct 548 AGTAACACGTGGCGTGACGGTCCTAACATGACGGTAGCTCGATCGGATCCAGTCGCGGTT 607 Query 535 -TACCTCGATGAGAAAATATACGTCATAGGAGGTTGTGGGAATG-ATGAGTCTGCCAATT 592 | | |||| ||| |||||||||| | |||||| | | || || | ||||||| | ||| Sbjct 608 CT-CATCGACCAGAGAATATACGTCTTGGGAGGTCGCGAGA-TGGACGAGTCTGACGATT 665 Query 593 GGTTAGAGGTATTCGACATAAAGACTCAGACTTGGAGAGCTTTGCCTAGT 642 |||| ||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 666 GGTTTGAGGTGTTCGACATCAAGACTCAGACTTGGAGAGCCTTGCCTAGT 715 Score = 254 bits (137), Expect = 2e-66 Identities = 368/471 (78%), Gaps = 50/471 (11%) Strand=Plus/Plus Query 676 ATTAAAGTCAACCCCAATGCTTTTAAAGGCAAGCTTTACGTAGCGGCAGAGACAAAAGAC 735 ||||| ||||||||||||||||| |||| |||||||||||||||||| ||| ||| ||| Sbjct 806 ATTAACGTCAACCCCAATGCTTTGGAAGGAAAGCTTTACGTAGCGGCACAGATAAATGAC 865 Query 736 TACACTTACGAGCCCAAAGATGGTACATGGAATGTCGTAAGAGAGAAATCGA-TATTCA- 793 |||||||||||||||||||||| ||||||||| || || | || ||||| | || | | Sbjct 866 TACACTTACGAGCCCAAAGATGATACATGGAAAGTTGT-A-AG-CAAATCAAGTA-TAAG 921 Query 794 AAGA-TATAAGATATTGGTGTGTGATAGAGGATGTAATGTACTCTTG-CACTTACGTTGG 851 |||| || ||| | |||||||||||||||| ||||||||||| |||| || | ||| | Sbjct 922 AAGAGTA-AAGGT-TTGGTGTGTGATAGAGAATGTAATGTACGCTTGCCA-TGACG-T-- 975 Query 852 GTCTT-TAATGTGGTATGACT-CTGAGGGTAGA-GAGTGGAGAGAGATAAAGGGTTTGGA 908 | || | | ||||||||| | | |||| |||| | |||||||||||| |||||||||| Sbjct 976 CT-TTCTGAGGTGGTATGATTAC-GAGGATAGACG-GTGGAGAGAGATCCAGGGTTTGGA 1032 Query 909 CGAATTTACTG-T-CTGCCTTAC-ATCGTATTTAAAAAGGATGTATGTC-CATGGAATAG 964 ||| || || | | || ||| | | ||| | | || | | | |||||| Sbjct 1033 AGAA-TT-GTGTTACCACCCTACGA-GGGGTTT---CA-G-TG--GGGCGGAAAGAATAG 1082 Query 965 TTAACTATGGTGGGAAACTTGTAGTTATGTGGAGGCAG-TGGTATAATGAAGACGGCAAA 1023 |||||||||||||||||||||||||||||||| | | | || | || | ||||| ||| Sbjct 1083 TTAACTATGGTGGGAAACTTGTAGTTATGTGGCGTCCGGTGC-A-AA-GC-GACGGAAAA 1138 Query 1024 GGACGGAAAATT-AAAGTTGG-GTTCTCTAAGATTGCGTTAGAGAAGCGCCA-TAAAGAT 1080 | | |||||| ||| |||| || ||| | ||||||||||||||||||| | ||||||| Sbjct 1139 G-AT--AAAATTGAAATTTGGTGTGCTC-A-GATTGCGTTAGAGAAGCGC-AGTAAAGAT 1192 Query 1081 GAGATTTGGGGTAAGACGGAGTGGGTTAATACTGTGCTTGA-GATCCCCAA 1130 ||||| |||||||||| |||||| ||||| |||||||| | | ||||||| Sbjct 1193 GAGATCTGGGGTAAGATAGAGTGGATTAATTCTGTGCTT-ACGGTCCCCAA 1242 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58182431655 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5