BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947862
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39530.1 | Symbols: | Protein of unknown function (DUF1997)... 1175 0.0
AT5G39520.1 | Symbols: | Protein of unknown function (DUF1997)... 580 5e-165
> AT5G39530.1 | Symbols: | Protein of unknown function (DUF1997)
| chr5:15826089-15828035 REVERSE LENGTH=1434
Length=1434
Score = 1175 bits (636), Expect = 0.0
Identities = 714/752 (95%), Gaps = 3/752 (0%)
Strand=Plus/Plus
Query 1 TCTGATCTTTGAGATAGATAATGAGAGAAATGACAGCGAGGTCTGCGGTTTTATCGTCGG 60
|||||| | ||||| |||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct 499 TCTGATATCTGAGAGAGATAATGGGAGAAATGACGGCGAGGTCTTCGGTTTTATCGTCGG 558
Query 61 GGATGTTCAGAGGTTACCACCGGCCGGTGAAGACGGAGGTGAGATCAATAATACGGTCTA 120
||||||||||| |||||||||||||||||| |||||||||||||||| || ||||||| |
Sbjct 559 GGATGTTCAGAAGTTACCACCGGCCGGTGACGACGGAGGTGAGATCACTATTACGGTCGA 618
Query 121 GAGTGAAGTGCCAAGTGTCTTCCGTAAAACCCGCCACATATTCATCAAAACTCTCCACAG 180
|||||| |||||||||||| ||||||||||||||||| |||||||| | |||||||||||
Sbjct 619 GAGTGATGTGCCAAGTGTCATCCGTAAAACCCGCCACGTATTCATCGAGACTCTCCACAG 678
Query 181 ATATTCCTCTCCACGAGTCTCCTCAGGCTTTGTTCGATGAGTATTTGGAAGATAAATCAA 240
||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 679 ATATTCCTCTCAACGAGTCTCCTCAGGCTTTGTTCGATGAGTATTTAGAGGATAAATCAA 738
Query 241 GATTATTCGAAGCAATGTTTCCAGATAAACCCAGAAGTTATAGGCTTAACGAGGAAGAAT 300
|| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 739 GAGTATTCGAAGCAATGTTTCCAGATAAGCCCAGAAGTCATAGGCTTAACGAGGAAGAAT 798
Query 301 GGAGAATTCAGATGTTACCAATAAACTTCCTCTTCCTTACTGTGTGGCCGGTGGTAGATA 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 799 GGAGAATTCAGATGTTACCAATAAACTTCCTCTTCCTTACTGTGTGGCCTGTGGTAGATA 858
Query 361 TGCGGTTAAGATGCAAATCCAACGGTCAAGATTATCCGCCAGATGTACCTTTAGATATAA 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TGAGGTTAAGATGCAAATCCAACGGTCAAGATTATCCGCCAGATGTACCTTTAGATATAA 918
Query 421 CCAAAGTTCTTGAGCTCAACATGATGAGATGGAAGCTTAAAGGGCTTGATCGAGTAATGG 480
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 919 CCAAAGTTCTTGAGCTCAACATGATGAGATGGAAGCTTCAAGGGCTTGACCGAGTAATGG 978
Query 481 AACC-GTCTGATTTCAGTTTGGAAGTCAAAGGAGCATTGTACCCTGACCGAAGAGGAAAG 539
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 AACCAG-CTGATTTCAGTTTGGAAGTCAAAGGAGCATTGTACCCTGACCGAAGAGGAAAG 1037
Query 540 CAAACAAGGCTCAGAGGTCAACTAGAGATGAACATAAGCTTTGTGCTTCCTCCGGTTCTT 599
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1038 CACACAAGGCTCAGAGGTCAACTAGAGATGAACATAAGCTTTGTTCTTCCTCCGGTTCTT 1097
Query 600 GAGTTAGTACCTGAAGATGTTCGGAGAAACTTGGCCAATGCGGTTTTGACCGGTTTAGTG 659
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1098 GAGTTGGTACCTGAAGATGTTCGAAGAAACTTGGCCAATGCGGTTTTGACCGGTTTAGTG 1157
Query 660 GAAAACATGAAGCATAAGGTTAATGGGAGCTTGCTTGCTGATTATAGCAGGTTCAAGAAT 719
|| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1158 GAGAATATGAAGCATAAGGTTAATGGGAGCTTGCTTTCTGATTATAGCAGGTTCAAGAAT 1217
Query 720 GAAAGAAAGTTACAAAAAGTAATCGAGTAAAC 751
|||||||| ||||||| | |||||||||||||
Sbjct 1218 GAAAGAAAATTACAAAGA-TAATCGAGTAAAC 1248
> AT5G39520.1 | Symbols: | Protein of unknown function (DUF1997)
| chr5:15823735-15825492 REVERSE LENGTH=954
Length=954
Score = 580 bits (314), Expect = 5e-165
Identities = 536/641 (84%), Gaps = 23/641 (4%)
Strand=Plus/Plus
Query 97 AGGTGAGATCAATAATACGGTCTAGAGTGAAGTGCCAAGTGTCTTCC-GTAAAACCCGCC 155
|||| ||||| | || ||||| ||||||||||| || |||| || |||||| |||||
Sbjct 132 AGGTTAGATC-A-AA-ACGGTGGAGAGTGAAGTGTCACTTGTC-ACCTGTAAAATCCGCC 187
Query 156 ACA-TATTCATC-AAAACTCTCCACAGATATTC-CTCTCCACGAGTCTCCTCAGGCTTTG 212
| | ||||| || |||| | || || |||| || |||||||||||||||||||||| |||
Sbjct 188 A-AGTATTCCTCTAAAA-TATCAACCGATA-TCGCTCTCCACGAGTCTCCTCAGGCCTTG 244
Query 213 TTCGATGAGTATTTGGAAGATAAATCAA-GATTATTCGAAGCAATGTTTCCAGATAAACC 271
|| ||||| ||||||||||| ||||||| | || ||||||||||||||||| ||||||||
Sbjct 245 TTTGATGAATATTTGGAAGACAAATCAAGGGTT-TTCGAAGCAATGTTTCCGGATAAACC 303
Query 272 CAGAAGTTATAGGCTTAACGAGGAAGAATGGAGAATTCAGATGTTACCAATAAACTTCCT 331
|| || ||||||||||| ||||||||||||||||| || |||||||||||||| || |
Sbjct 304 CAAAAACTATAGGCTTAATGAGGAAGAATGGAGAATCCAAATGTTACCAATAAAATTTTT 363
Query 332 CTTCCTTACTGTGTGGCCGGTGGTAGAT-ATGCGG-TTAAGATGCAAATCCAACGGTCAA 389
|||||| |||| ||| || ||||| | | |||||| || ||||||||||||||||||||
Sbjct 364 CTTCCTCACTGCGTGTCCAGTGGT-GGTCATGCGGATT-AGATGCAAATCCAACGGTCAG 421
Query 390 GATTATCCGCCAGATGTACCTTTAGATATAACCAAAGTTCTTGAGCTCAACATGATGAGA 449
||||| || |||| |||||| || | |||||||||||||||||||||||||||| || |
Sbjct 422 GATTACCCATCAGACGTACCTCTACACATAACCAAAGTTCTTGAGCTCAACATGACGAAA 481
Query 450 TGGAAGCTTAAAGGGCTTGATCGAGTAATGGAACCGTCTGATTTCAGT-TTGGAAGTCAA 508
||| ||||| |||||||||| |||||||||||||| ||||||||| | ||||| || ||
Sbjct 482 TGGGAGCTTCAAGGGCTTGACCGAGTAATGGAACCAACTGATTTCACTCTTGGA-GTAAA 540
Query 509 AGGAGCATTGTACCCTGACCGAAGAGGAAAGCAAACAAGGCTCAGAGGTCAACTAGAGAT 568
||||||||| ||||| ||||| | |||| ||| || ||||||| ||||| |||||| |
Sbjct 541 AGGAGCATTATACCCAGACCGGCGTGGAAGGCACACGAGGCTCAAAGGTCGACTAGAAAC 600
Query 569 GAACATAAGCTTTGTGCTTCCTCCGGTTCTTGAG-TTAGTACCTGAAGATGTTCGGAGAA 627
|| ||| ||||| ||||||||| | ||||| | | || ||||| ||||||||| ||||||
Sbjct 601 GACCATTAGCTTCGTGCTTCCTTCAGTTCTCGCGCTT-GTACCAGAAGATGTTAGGAGAA 659
Query 628 ACTTGGCCAATGCGGTTTTGACCGGTTTAGTGGAAAACATGAAGCATAAGGTTAATGGGA 687
|| ||||||||||| ||||| ||||||| ||||| ||||||||||||| ||||| || ||
Sbjct 660 ACATGGCCAATGCGATTTTGGCCGGTTTGGTGGATAACATGAAGCATAGGGTTATTGAGA 719
Query 688 GCTTGCTTGCTGATTATAGCAGGTTCAAGA-ATGAAAGAAA 727
||||| | ||||||||||||| ||||| | ||||||||||
Sbjct 720 GCTTGGTCGCTGATTATAGCAAATTCAA-ATATGAAAGAAA 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5