BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947863
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39520.1 | Symbols: | Protein of unknown function (DUF1997)... 1068 0.0
AT5G39530.1 | Symbols: | Protein of unknown function (DUF1997)... 573 8e-163
> AT5G39520.1 | Symbols: | Protein of unknown function (DUF1997)
| chr5:15823735-15825492 REVERSE LENGTH=954
Length=954
Score = 1068 bits (578), Expect = 0.0
Identities = 680/729 (93%), Gaps = 8/729 (1%)
Strand=Plus/Plus
Query 1 AAGATCCAATCTTTGTGAAAATGGCGGTAAGTTCTGCGGTGTATTCGTGGCCTGCGATGC 60
||||||||||||| ||| ||||||||||||| |||||||||||||| || || | ||||
Sbjct 58 AAGATCCAATCTTGGTG-AAATGGCGGTAAGCTCTGCGGTGTATTCATGCCCGGGGATGA 116
Query 61 TAGGAAGTTTCCGGCCA-GTGAGATCAAAACGGTGGAGAGTGAAGTGTCAGTTGTCACCT 119
| ||||| || || || || ||||||||||||||||||||||||||||| |||||||||
Sbjct 117 TCGGAAG-TTGTGGGCAGGTTAGATCAAAACGGTGGAGAGTGAAGTGTCACTTGTCACCT 175
Query 120 GTAAAA-CCGGCCAAATATTCCTCTAAAATATCAACCGATATCGCTCTCCACGAGTCTCC 178
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GTAAAATCC-GCCAAGTATTCCTCTAAAATATCAACCGATATCGCTCTCCACGAGTCTCC 234
Query 179 TCAGGCTTTGTTCGATGAGTATTTAGAGGACAAATCGAGGGTTTTCGAAGCAATGTTTCC 238
|||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct 235 TCAGGCCTTGTTTGATGAATATTTGGAAGACAAATCAAGGGTTTTCGAAGCAATGTTTCC 294
Query 239 GGATAAACCCAAAAACCATAGGCTTAATGAGGAAGAATGGAGAATCCAAATGTTACCAAT 298
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GGATAAACCCAAAAACTATAGGCTTAATGAGGAAGAATGGAGAATCCAAATGTTACCAAT 354
Query 299 AAAATTTTTCTTCATCACTGCGTGGCCAGTGGTGGTTATGCGGATTAGATGCAAATCCAA 358
||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 355 AAAATTTTTCTTCCTCACTGCGTGTCCAGTGGTGGTCATGCGGATTAGATGCAAATCCAA 414
Query 359 CGGCCAGGATTACCCATCCGACGTACCTCTACACACAACCAAAGTTCTTGAGCTCAACAT 418
||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 415 CGGTCAGGATTACCCATCAGACGTACCTCTACACATAACCAAAGTTCTTGAGCTCAACAT 474
Query 419 GACGAAATGGGAGCTTCAAGGGCTTGACCGAGTAATGGAACCATCTGATTTCACTCTCGG 478
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 475 GACGAAATGGGAGCTTCAAGGGCTTGACCGAGTAATGGAACCAACTGATTTCACTCTTGG 534
Query 479 AGTCAAAGGAGCATTGTACCCAGACCGACGTGGAAGACAAACAAGGCTCAAAGGTCGACT 538
||| ||||||||||| ||||||||||| |||||||| || || |||||||||||||||||
Sbjct 535 AGTAAAAGGAGCATTATACCCAGACCGGCGTGGAAGGCACACGAGGCTCAAAGGTCGACT 594
Query 539 AGAAACGAGCATTAGCTTCGTGCTTCCTTCAGTTCTCGCACTTGTACCAGAAGATGTTAG 598
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 595 AGAAACGACCATTAGCTTCGTGCTTCCTTCAGTTCTCGCGCTTGTACCAGAAGATGTTAG 654
Query 599 GAGAAACATGGCCAATGCGATTTTGGCCAGTTTGGTGGAGAGCATGAAGCATAAGGTTAT 658
|||||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||||
Sbjct 655 GAGAAACATGGCCAATGCGATTTTGGCCGGTTTGGTGGATAACATGAAGCATAGGGTTAT 714
Query 659 TGAGAGCTTGGTCGCTGATTATAGCAAATTCAAATATGAAAGAAAAACACACAACTAGTA 718
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 715 TGAGAGCTTGGTCGCTGATTATAGCAAATTCAAATATGAAAGAAAAA-A-ACA-CTAGTA 771
Query 719 ATTGATATC 727
|||||||||
Sbjct 772 ATTGATATC 780
> AT5G39530.1 | Symbols: | Protein of unknown function (DUF1997)
| chr5:15826089-15828035 REVERSE LENGTH=1434
Length=1434
Score = 573 bits (310), Expect = 8e-163
Identities = 533/639 (83%), Gaps = 21/639 (3%)
Strand=Plus/Plus
Query 78 GTGAGATCA--A-AACGGTGGAGAGTGAAGTGTC-AGTTGTCA-CCTGTAAAACCGGCCA 132
||||||||| | ||||| |||||||| ||| | || ||||| || |||||||| ||||
Sbjct 597 GTGAGATCACTATTACGGTCGAGAGTGATGTGCCAAG-TGTCATCC-GTAAAACCCGCCA 654
Query 133 AATATTCCTCTAAAATATCAACCGATA-TCGCTCTCCACGAGTCTCCTCAGGCTTTGTTC 191
||||| || | | | || || |||| || ||||| |||||||||||||||||||||||
Sbjct 655 CGTATTCATCGAGACTCTCCACAGATATTC-CTCTCAACGAGTCTCCTCAGGCTTTGTTC 713
Query 192 GATGAGTATTTAGAGGACAAATCGAGGGTTTTCGAAGCAATGTTTCCGGATAAACCCAAA 251
||||||||||||||||| ||||| || || ||||||||||||||||| ||||| |||| |
Sbjct 714 GATGAGTATTTAGAGGATAAATCAAGAGTATTCGAAGCAATGTTTCCAGATAAGCCCAGA 773
Query 252 AACCATAGGCTTAATGAGGAAGAATGGAGAATCCAAATGTTACCAATAAAATTTTTCTTC 311
| ||||||||||| ||||||||||||||||| || |||||||||||||| || |||||
Sbjct 774 AGTCATAGGCTTAACGAGGAAGAATGGAGAATTCAGATGTTACCAATAAACTTCCTCTTC 833
Query 312 ATCACTGCGTGGCCAGTGGTGGTTATGCGGATTA-GATGCAAATCCAACGGCCAGGATTA 370
| |||| |||||| ||||| | |||| || ||| |||||||||||||||| || |||||
Sbjct 834 CTTACTGTGTGGCCTGTGGTAGATATGAGG-TTAAGATGCAAATCCAACGGTCAAGATTA 892
Query 371 CCCATCC-GACGTACCTCTACACACAACCAAAGTTCTTGAGCTCAACATGACGAAATGGG 429
|| || || |||||| || | | |||||||||||||||||||||||||| || ||||
Sbjct 893 TCCG-CCAGATGTACCTTTAGATATAACCAAAGTTCTTGAGCTCAACATGATGAGATGGA 951
Query 430 AGCTTCAAGGGCTTGACCGAGTAATGGAACCATCTGATTTCACTCTCGGA-GTCAAAGGA 488
|||||||||||||||||||||||||||||||| ||||||||| | | ||| |||||||||
Sbjct 952 AGCTTCAAGGGCTTGACCGAGTAATGGAACCAGCTGATTTCAGTTT-GGAAGTCAAAGGA 1010
Query 489 GCATTGTACCCAGACCGACGTGGAA-GACAAACAAGGCTCAAAGGTCGACTAGAAACGAG 547
||||||||||| |||||| | |||| | || |||||||||| ||||| |||||| | ||
Sbjct 1011 GCATTGTACCCTGACCGAAGAGGAAAG-CACACAAGGCTCAGAGGTCAACTAGAGATGAA 1069
Query 548 CATTAGCTTCGTGCTTCCTTCAGTTCTCGCACTTG-TACCAGAAGATGTTAGGAGAAACA 606
||| ||||| || |||||| | ||||| | | ||| |||| ||||||||| | ||||||
Sbjct 1070 CATAAGCTTTGTTCTTCCTCCGGTTCTTG-AGTTGGTACCTGAAGATGTTCGAAGAAACT 1128
Query 607 TGGCCAATGCGATTTTGGCCAGTTTGGTGGAGAGCATGAAGCATAAGGTTATTGAGAGCT 666
||||||||||| ||||| || |||| ||||||| |||||||||||||||| || |||||
Sbjct 1129 TGGCCAATGCGGTTTTGACCGGTTTAGTGGAGAATATGAAGCATAAGGTTAATGGGAGCT 1188
Query 667 TGGTCGCTGATTATAGCAAATTCAA-ATATGAAAGAAAA 704
|| | |||||||||||| ||||| | |||||||||||
Sbjct 1189 TGCTTTCTGATTATAGCAGGTTCAAGA-ATGAAAGAAAA 1226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35716478517
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5