BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947867
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39480.1 | Symbols: | F-box family protein | chr5:15801635-... 922 0.0
AT5G39490.1 | Symbols: | F-box family protein | chr5:15805808-... 883 0.0
AT5G39460.1 | Symbols: | F-box family protein | chr5:15788289-... 811 0.0
AT5G39450.1 | Symbols: | F-box family protein | chr5:15785717-... 791 0.0
AT5G39470.1 | Symbols: | F-box family protein | chr5:15791952-... 202 9e-51
> AT5G39480.1 | Symbols: | F-box family protein | chr5:15801635-15803341
REVERSE LENGTH=1707
Length=1707
Score = 922 bits (499), Expect = 0.0
Identities = 795/930 (85%), Gaps = 51/930 (5%)
Strand=Plus/Plus
Query 21 ATGATGAACAAGGAATCGTTTGGTGCTTGCTTGCTTCTTACGCTTCCCCAATATGTGTTT 80
||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 1 ATGATGAACAAGGAATCGTTTGGAGCTTGCTTGCTTCTTACGCTTCCAGAAGATGTGTTT 60
Query 81 GCTGTTATCTCACGTTTTCTTTCTCCAAGCGACATTTGCAATCTGATCTTGTGCGGTAAA 140
|||||||| || |||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 61 GCTGTTATTTCTCGTTTTCTTTCTCCAAGCGATATTTGCAATCTAATCTTGTGCGGCAAA 120
Query 141 AGTATTTGTGCCCTTGTCCATTCCGACAAGACATGGCTTGTGCAATGTGAAGTCGTAAAG 200
||| | |||||||||| || |||| |||| ||||||||||||||||||| ||||||
Sbjct 121 AGTCTGCCTGCCCTTGTCGATACCGAGAAGATGTGGCTTGTGCAATGTGAAGAAGTAAAG 180
Query 201 GTTATTCCTTTGTTTGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCGCTT 260
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTTCTTCCTTTGTTGGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTT 240
Query 261 TGTAGGTTTCTTGTAGAGGTGGTGAAGCCGCTTGTTGGGATTTGGGTTCAA-AAGAACCC 319
||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||
Sbjct 241 TGTAGGTTTCTTGTAGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAACAA-AACCC 299
Query 320 TGAACGTGGGAATGTCGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGATGCCGGAT 379
||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 TGAACTTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGAT 359
Query 380 AATTCCTCAAGAAG-TTGGTCCTTTGTGGATTCAAGAAGGACAAA-TTGTGTGGTCACCA 437
|||||| ||| ||| ||| ||||| |||||||||||| |||| | || |||||||||
Sbjct 360 AATTCCACAA-AAGGTTGCTCCTTCGTGGATTCAAGA-GGACCGAGTTAAGTGGTCACCG 417
Query 438 GTGTTTGAGATAATCTGCGGTGTT-GATGGCTCTAACGGTTTTTTCCTCCATGGAAGAGA 496
|||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct 418 GTGTTTGAGATAATCTGCGG-GTTTGATGGCTCTAACGGGTTTTTCCTCCATGGAAGAGA 476
Query 497 CGAAGAAGGCAGTTGTTTGTACCCTGGTTTCGTTATGGGCATCGAGAAGAGTTGCAATG- 555
| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 477 CAAAGAAGGCAGTTGCTTGTACCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGCAATGT 536
Query 556 AGCTTCTA-CTCGAAGTTGAGCCGAGGCAAGAGAAGAGTTCGT-CTAATGAGATTGAGAG 613
| |||| | ||||| |||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct 537 A-CTTC-AGCTCGATGTTGTGCCGAGGCAAGAGAAGAGTTCGTGC-AATGAGATTGAGAG 593
Query 614 AAAAGACTCAAGAAAAGAGTTATCGGGGAAAATAAATGAGGGAGGGGTTCCATTT-GGAA 672
| || ||||||| | | | | ||| | ||| | |||||||| |||
Sbjct 594 AGGAGCCTCAAGAGA-G-G--A--GGG-A--------GAG--A----TTCCATTTTGGAT 632
Query 673 ATCTAGGCTTT-AGTGATAGAAGGAGCTTACTTGATATAGTGGCAAACCATGTAAGTCTA 731
|| | |||| |||||||||| | || || |||| ||| ||| |||||||||||||
Sbjct 633 G-CTCG-CTTTTAGTGATAGAAAAAATTTGCTCAATATTGTGACAAGCCATGTAAGTCTA 690
Query 732 CGTGTCGGTG-AACCATTAAGAGGAAA-GTTATTTCCCACCAGGTCGAAAGATGATGACG 789
| ||| |||| ||||||||| | |||| |||||||||||| | | |||| |||||||
Sbjct 691 CATGT-GGTGGAACCATTAA-ATGAAATGTTATTTCCCAC-AT-T-GAAATATGATGA-- 743
Query 790 AAGCGGTGTTG-TTGGAACGCAGAACCATGCTCCTTAAAATGCTCAAATTTGGTGGGAAC 848
| || || || ||| ||||||||||||| ||||||||||||| ||| |||||||| ||
Sbjct 744 A-GCAATGCTGGTTG-AACGCAGAACCATTCTCCTTAAAATGCACAAGTTTGGTGGAAAT 801
Query 849 TGGAAGCACATGAATTTGGAGGAGGATGATCAGCTATATTATAATCCTATGCAGGTAGAC 908
|||||| |||||||||||||||||||||||||| | | ||| ||||| ||||| ||| |
Sbjct 802 TGGAAGAACATGAATTTGGAGGAGGATGATCAGTTGTGTTACAATCCCATGCAAGTAAAA 861
Query 909 ATAAATGAGATATGGGAAAATCTCGGTGAT 938
||||| ||||| | ||||||||||||||||
Sbjct 862 ATAAACGAGATGTTGGAAAATCTCGGTGAT 891
> AT5G39490.1 | Symbols: | F-box family protein | chr5:15805808-15807508
REVERSE LENGTH=1701
Length=1701
Score = 883 bits (478), Expect = 0.0
Identities = 789/930 (85%), Gaps = 57/930 (6%)
Strand=Plus/Plus
Query 24 ATGAACAAGGAATCGTTTGGTGCTTGCTTGCTTCTTACGCTTCCCCAATATGTGTTTGCT 83
||||||| ||||| |||||||||||||||||||||| |||||| || || | |||| |
Sbjct 1 ATGAACACGGAATTATTTGGTGCTTGCTTGCTTCTTATGCTTCCAGAAGATATCTTTGTT 60
Query 84 GTTATCTCACGTTTTCTTTCTCCAAGCGACATTTGCAATCTGATCTTGTGCGGTAAAAGT 143
|||||||| |||||||||||||||||||| |||||||| || ||||||||||| ||||||
Sbjct 61 GTTATCTCTCGTTTTCTTTCTCCAAGCGATATTTGCAACCTAATCTTGTGCGGCAAAAGT 120
Query 144 ATTTGTGCCCTTGTCCATTCCGACAAGACATGGCTTGTGCAATGTGAAGTCGTAAAGGTT 203
|| ||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 121 CTTCGTGCCCTTGTCGATTCCGAGAAGACATGGCTTGTGCAATGTGAAGAAGTAAAGGTT 180
Query 204 ATTCCTTTGTTTGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCGCTTTGT 263
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CTTCCTTTGTTGGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTTTGT 240
Query 264 AGGTTTCTTGTAGAGGTGGTGAAGCCGCTTGTTGGGATTTGGGTTCAA-AAGAACCCTGA 322
|||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||
Sbjct 241 AGGTTTCTTGTAGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAACAA-AACCCTGA 299
Query 323 ACGTGGGAATGTCGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGATGCCGGATAAT 382
|| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 ACTTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATAAT 359
Query 383 TCCTCAAGAAG-TTGGTCCTTTGTGGATTCAAGAAGGACAAA-TTGTGTGGTCACCAGTG 440
||| ||| ||| ||| ||||| |||||||||||| |||| | || ||||||||| |||
Sbjct 360 TCCACAA-AAGGTTGCTCCTTCGTGGATTCAAGA-GGACCGAGTTAAGTGGTCACCGGTG 417
Query 441 TTTGAGATAATCTGCGGTGTT-GATGGCTCTAACGGTTTTTTCCTCCATGGAAGAGACGA 499
||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 418 TTTGAGATAATCTGCGG-GTTTGATGGCTCTAACGGGTTTTTCCTCCATGGAAGAGACAA 476
Query 500 AGAAGGCAGTTGTTTGTACCCTGGTTTCGTTATGGGCATCGAGAAGAGTTGCAATG-AGC 558
|||||||||||| |||||||||||||| ||||||||||| ||||||| |||| ||| | |
Sbjct 477 AGAAGGCAGTTGCTTGTACCCTGGTTTTGTTATGGGCATTGAGAAGAATTGCGATGTA-C 535
Query 559 TTCTA-CTCGAAGTTGAGCCGAGGCAAGAGAAGAGTTCGT-CTAATGAGATTGAGAGAAA 616
||| | |||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 536 TTC-AGCTCGAAGTTGTGCCGAGGCAAGAGAAGAGTTCGTGC-AATGAGATTGAGAGAGG 593
Query 617 AGACTCAAGAAAAGAGTTATCGGGGAAAATAAATGAGGGAGGGGTTCCATTT-GGAAATC 675
|| ||||||||| | | | ||| | ||| | |||||||| ||| |
Sbjct 594 AGCCTCAAGAAA-G-G--A--GGG-A--------GAG--A----TTCCATTTTGGATG-C 631
Query 676 TAGGCTTT-AGTGATAGAAGG-AGCTTACTTGATATAGTGGCAAACCATGTAAGTCTACG 733
| | |||| || ||||||| | ||| || |||| || ||||||||||| ||||||
Sbjct 632 TCG-CTTTTAGCGATAGAAAACA-CTTGCTCAATATTGTCACAAACCATGTAGGTCTACA 689
Query 734 TGTCGGTG-AACCATTAAGAGGAAA-GTTATTTCCCACCAGGTCGAAAGATGATGACG-A 790
||| |||| ||||||||| | |||| |||||||||||| | | |||||||||||| | |
Sbjct 690 TGT-GGTGGAACCATTAA-ATGAAATGTTATTTCCCAC-AT-T-GAAAGATGATGAAGTA 744
Query 791 A-GCGGTGTTGTTGGAACGCAGAACCATGCTCCTTAAAATGCTCAAATTTGGTGGGAACT 849
| || || | | ||||||||||||| ||||||||||||| ||| |||||||| || |
Sbjct 745 AAGC--TGAA-T-G-AACGCAGAACCATTCTCCTTAAAATGCACAAGTTTGGTGGAAATT 799
Query 850 GGAAGCACATGAATTTGGAGGAGGATGATCAGCT-ATATTATAATCCTATGCAGGTAGAC 908
||||| ||||||||||||||||||||| |||| | | ||| ||||| ||||||||| |
Sbjct 800 GGAAGAACATGAATTTGGAGGAGGATGGTCAGTTGAG-TTACAATCCCATGCAGGTAAAA 858
Query 909 ATAAATGAGATATGGGAAAATCTCGGTGAT 938
||||| ||||| | ||||||||||| ||||
Sbjct 859 ATAAACGAGATGTTGGAAAATCTCGATGAT 888
Score = 292 bits (158), Expect = 5e-78
Identities = 329/406 (81%), Gaps = 34/406 (8%)
Strand=Plus/Plus
Query 1039 GGAAGTCTAG-TCCTGAAGAGAACACGCCGCGGCCTTCG-AGCAGTGAGATTAGACGTTC 1096
|||||||||| || | || |||||| | | |||||| || ||||| ||||||| |||
Sbjct 956 GGAAGTCTAGTTCTTCAA-AGAACA--CAAC-ACCTTCGCAG-AGTGAAATTAGACATTC 1010
Query 1097 GAATCGCCAAACCTTTCTTAGCTCTGGTGATACATTCGGCCTTAGTCTCAAAGCTTCCTA 1156
||||||| ||| ||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 1011 GAATCGCAAAAGCTTTCTTAGCTCTGGTGATACATTCGGTCTTGGACTCAAAGCTTCCTA 1070
Query 1157 CACTGAGATGTCTTCTTACCAAGGGTGGCCA-ATCATGTCCCAAAACCGCTTTTCCCTTC 1215
|||||||||||||| ||| ||||||||||| | ||||| | | ||| ||||| | ||
Sbjct 1071 CACTGAGATGTCTTATTATAAAGGGTGGCCAGA-CATGTACGTACACCACTTTTTAC-TC 1128
Query 1216 -ATAAACTACCAATGAAGAATCCCATCAATAATC-AAGA-GTATGCCGGTTTGTGGGGAG 1272
||||||||||| | ||||| || || || | | || | |||||| |||||||||||||
Sbjct 1129 TATAAACTACCAGTTAAGAAAGCCGTCGATCA-CGAA-ACGTATGCTGGTTTGTGGGGAG 1186
Query 1273 GAACGTTTGGCTGGCCACCTGAGCAA-TGTCG-AGAAGATAAGTCCAGAAAGG-CTCTAT 1329
||||||||||||||||| ||| | || |||| | ||| |||| | |||| | |||| |
Sbjct 1187 GAACGTTTGGCTGGCCAGCTG-GAAAATGTCCTA-AAGGTAAGACG-GAAAAGTCTCT-T 1242
Query 1330 T-CTTACTGATGCTCACTTAT-AAAGAATCTGAGGAGAATAGTGAGAGAGTTCTCATTGG 1387
| ||||||||||||||||||| ||| || || | | |||||||||||||||||||||
Sbjct 1243 TACTTACTGATGCTCACTTATGAAA-AA---GA--ATA-TAGTGAGAGAGTTCTCATTGG 1295
Query 1388 GACGAAAATACTTGAAGGGG---GCCTTGTGAGGCGTCCCAATGGA 1430
||| |||||||| ||||| |||||||||| ||||||||||||
Sbjct 1296 GACAAAAATACTGGAAGGAAATCGCCTTGTGAGCCGTCCCAATGGA 1341
> AT5G39460.1 | Symbols: | F-box family protein | chr5:15788289-15790004
REVERSE LENGTH=1716
Length=1716
Score = 811 bits (439), Expect = 0.0
Identities = 551/604 (91%), Gaps = 12/604 (2%)
Strand=Plus/Plus
Query 21 ATGATGAACAAGGAATCGTTTGGTGCTTGCTTGCTTCTTACGCTTCCCCAATATGTGTTT 80
||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 1 ATGATGAACAAGGAATCGTTTGGAGCTTGCTTGCTTCTTACGCTTCCCGAAGATGTGTTT 60
Query 81 GCTGTTATCTCACGTTTTCTTTCTCCAAGCGACATTTGCAATCTGATCTTGTGCGGTAAA 140
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 GCTGTTATCTCTCGTTTTCTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAA 120
Query 141 AGTATTTGTGCCCTTGTCCATTCCGACAAGACATGGCTTGTGCAATGTGAAGTCGTAAAG 200
||| |||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||
Sbjct 121 AGTCTTTGTGCCCTTGTCGATTCCGAGAAGACGTGGCTTGTGCAATGTGAAGAAGTAAAA 180
Query 201 GTTATTCCTTTGTTTGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCGCTT 260
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTTCTTCCTTTGATTGAACTAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTT 240
Query 261 TGTAGGTTTCTTGTAGAGGTGGTGAAGCCGCTTGTTGGGATTTGGGTTCAA-AAGAACCC 319
|||||||||||||| |||||||||||||||||| ||||||||||||| ||| || |||||
Sbjct 241 TGTAGGTTTCTTGTGGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAAGAA-AACCC 299
Query 320 TGAACGTGGGAATGTCGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGATGCCGGAT 379
||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 TGAACTTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGAT 359
Query 380 AATTCCTCAAGAAG-TTGGTCCTTTGTGGATTCAAGAAGGACAAATTGTGTGGTCACCAG 438
|||||| ||| ||| ||| |||||||||||||||||| || ||| | ||||||||| |
Sbjct 360 AATTCCACAA-AAGGTTGCTCCTTTGTGGATTCAAGAGGGCCAAGTCAAGTGGTCACCGG 418
Query 439 TGTTTGAGATAATCTGCGG-TGTTGATGGCTCTAACGGTTTTTTCCTCCATGGAAGAGAC 497
||||||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||
Sbjct 419 TGTTTGAGATAATTTGCGGCT-TTGATGGCTCTAAGGGTTTTTTCCTCCATGGAAGAGAC 477
Query 498 GAAGAAGGCAGTTGT-TTGTACCCTGGTTTCGTTATGGGCATCGAGAAGAGTTGCAATGA 556
|| |||| |||| | || ||||||||||||||||||| ||||||||||||||||||||
Sbjct 478 AAACAAGGTAGTT-TCTTATACCCTGGTTTCGTTATGGACATCGAGAAGAGTTGCAATGT 536
Query 557 GCTTCTACTCGAAGTTGAGCCGAGG-CAAGAGAAGAGTTCGT-CTAATGAGATTGAGAGA 614
||||||||||||||||||||||||| || ||||||||||||| | |||||||||||||||
Sbjct 537 GCTTCTACTCGAAGTTGAGCCGAGGTCA-GAGAAGAGTTCGTGC-AATGAGATTGAGAGA 594
Query 615 AAAG 618
|||
Sbjct 595 GAAG 598
Score = 645 bits (349), Expect = 0.0
Identities = 625/754 (83%), Gaps = 35/754 (5%)
Strand=Plus/Plus
Query 656 AGGGGTTCCATTTGGAAATCTAGGCTTTAGTGATAGAAGGAGCTTACTTGATATAGTGGC 715
||||| |||||||||| |||||| ||| |||||||||| || |||||| ||||||||| |
Sbjct 600 AGGGGATCCATTTGGAGATCTAGACTTCAGTGATAGAATGAACTTACTAGATATAGTGAC 659
Query 716 AAACCATGTAAGTCTACGTGTCGGTGAACCATTAAGAGGAAAGTTATTTCCCACCAGGTC 775
||| |||||||||||||| |||| ||||||||||| |||||| |||||||||||||||||
Sbjct 660 AAAACATGTAAGTCTACGAGTCGATGAACCATTAACAGGAAATTTATTTCCCACCAGGTC 719
Query 776 GAAAGATGATGACGAAGCGGTGTTGTTGGAACGCAGAACCATGCTCCTTAAAATGCTCAA 835
||| || ||||||||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct 720 -AAA-AT-ATGACGAAGCGATGATGTTGGAACGCAGAAACATGCTCCTTAAAATGCTCAA 776
Query 836 ATTTGGTGGGAACTGGAAGCACATGAATTTGGAGGAGGATGATCAGCTATATTATAATCC 895
||||||||| |||||||||||||| || |||||||||||||| ||| | | ||| ||||
Sbjct 777 ATTTGGTGGAAACTGGAAGCACATAAACTTGGAGGAGGATGAGCAGTTGTGTTACAATCA 836
Query 896 TAT-GCAGGTAGACATAAATGAGATATG--GGAAAATCTCGGTGATAACACTGACATCAT 952
||| | || |||||||||| | || || ||||||||| |||||| ||| ||||| |||
Sbjct 837 TATAG-AGATAGACATAAAAAA-AT-TGTTGGAAAATCTTGGTGATGACATTGACAACAT 893
Query 953 GGACGATAGAGAGTATCAGAGAGAGGCTACACCAAGGAAGAAGAGCTTTAGCATGTTTTT 1012
||| |||| |||| |||||| ||||| |||||||||||||||||||||| || ||||||
Sbjct 894 GGAGGATATAGAGGATCAGATAGAGGTTACACCAAGGAAGAAGAGCTTTCGCCGGTTTTT 953
Query 1013 CATAAGTGGCATCATGCATATTCTTGGGAAGT-CTAGTCCTG-AAGAGAACACGCCGCGG 1070
| ||||||||| | |||||||||||||||| | ||| || || ||| || |||
Sbjct 954 AAGAAGTGGCATTAAACATATTCTTGGGAAGTTC-AGTTCTTCAA-AGATCAATTCGC-- 1009
Query 1071 CCTTCGAGCAGTGAGATTAGACGTTCGAATCGCCAAACCTTTCTTAGCTCTGGTGATACA 1130
| |||||||||||||| ||||||||||||||||||| |||||| ||||||||| |||||
Sbjct 1010 C-TTCGAGCAGTGAGACAAGACGTTCGAATCGCCAAAGCTTTCTCAGCTCTGGTAATACA 1068
Query 1131 TTCGGCCTTAGTCTCAAAGCTTCCTACACTGAGATGTCTTCTTACCAAGGGTGGCCAATC 1190
|| |||||||||| |||||||| | |||| ||||||||| || ||||||||||||||
Sbjct 1069 TTTTGCCTTAGTCTTAAAGCTTCATGCACTTTGATGTCTTCATATGAAGGGTGGCCAATC 1128
Query 1191 ATGTCC-CAAAACCGCTTTTCCCTTCATAAACTACCAATGAAGAATCC-CATCAATAATC 1248
||| | || | | |||||||||||||||||||||||||||||| || | || || | |
Sbjct 1129 ATGAGCGCAGA-CAACTTTTCCCTTCATAAACTACCAATGAAGAAACCTC-TCGATCA-C 1185
Query 1249 AA-GAGTATGCCGGTTTGTGGGGAGGAACGTTTGGCTGGCCACCTGAGCAATG-TCGAGA 1306
| | |||||| ||||||||||||||||||||||||||||| |||| | || | | ||
Sbjct 1186 GACGTGTATGCGGGTTTGTGGGGAGGAACGTTTGGCTGGCCCCCTGGGAAA-GATATTGA 1244
Query 1307 AGATAAGTCCAGAAAGGCTCTATTCTTACTGATGCTCACTTATAAAGAATCTGAGGAGAA 1366
|||| ||||| || | | |||| | |||||||||||| ||||||||| |||
Sbjct 1245 AGATGAGTCC-------CT-TCT-CTTATTAATGCTCACTTATGGAGAATCTGAAGAGGG 1295
Query 1367 TAGTGAGAGAGTTCTCATT-GGGACGAAAATACT 1399
|||||||||| |||| || ||||||||||||||
Sbjct 1296 TAGTGAGAGAATTCTT-TTCGGGACGAAAATACT 1328
> AT5G39450.1 | Symbols: | F-box family protein | chr5:15785717-15787946
FORWARD LENGTH=2137
Length=2137
Score = 791 bits (428), Expect = 0.0
Identities = 1103/1412 (78%), Gaps = 114/1412 (8%)
Strand=Plus/Plus
Query 33 GAATCGTTTGGTGCTTGCTTGCTTCT-TACGCTTCCCCAATATGTGT-TTGCTGTTATCT 90
||||| |||||| ||||||||||||| | | ||||| || |||| | ||||||||||
Sbjct 362 GAATCATTTGGTACTTGCTTGCTTCTGT-CTCTTCCAGAAGATGT-TATTGCTGTTATAG 419
Query 91 CACGTTTTCTTTCTCCAAGCGACATTTGCAATCTGATCTTGTGCGGTAAAAGTATTTGTG 150
|||||||| | |||||||| |||||||||||||||| ||| ||| | |||||| | ||||
Sbjct 420 CACGTTTTGTATCTCCAAGAGACATTTGCAATCTGAGCTTATGCTGCAAAAGTCTATGTG 479
Query 151 CCCTTGTCCATTCCGACAA-GA-CATGGCTTGTGCAATGTGAAGTCGTAAAGGTTATTCC 208
| |||| |||| || || || | ||||||||||| |||||||| ||||||||| ||||
Sbjct 480 ACGTTGTGGATTCAGA-AAGGATC-TGGCTTGTGCAGTGTGAAGTAGTAAAGGTTCTTCC 537
Query 209 TTTGTTTGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCGCTTTGTAGGTT 268
||| | ||||||| ||||||||||||| ||||| |||||||| |||||||||||| ||||
Sbjct 538 TTTATCTGAAATAATCCAATGGCGAATTGGGATTTCTTCTTATAAGGCGCTTTGTTGGTT 597
Query 269 TCTTGTAGAGGTGGTGAAGCCGCTTGTTGG-GATTTGGGTTCA-AAAGAACCCTGAACGT 326
||||| |||||| ||||||| |||||||| | |||||||||| || |||||||||| |
Sbjct 598 TCTTGGAGAGGTAATGAAGCCTCTTGTTGGTG-TTTGGGTTCATCAA-AACCCTGAACTT 655
Query 327 GGGAATGTCGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGATGCCGGATAATTCCT 386
|||||||| |||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 656 GGGAATGTTGTTTATGTCATGCCTGGTTTCTTGTCTGTTGTTGGGTGTCGGATAATTCCA 715
Query 387 CAAGAAGTTGGTCCTTTGTGGATTCAAGAAGG-ACAAATTGTGTGGTCACCAGTGTTTGA 445
||||| |||||||||||| ||||| || ||| | | || |||||||||| ||||||||
Sbjct 716 CAAGAGGTTGGTCCTTTGGGGATT-GAGGAGGCTCGAGTTATGTGGTCACCTGTGTTTGA 774
Query 446 GATAATCTGCGGTGTTGATGGCTCTAAC-GGTTTTTTCCTCCATGGAAGAGA-CGAAGAA 503
||| ||||| ||| |||||||||| | | |||||||||||||| ||||| ||| ||
Sbjct 775 GATTATCTGTGGTTTTGATGGCTCCGCCAAG-TTTTTCCTCCATGGGAGAGATGGAA-AA 832
Query 504 G-GC-A-GTTGTTTGTACCCTGGTTTCGTTATGGGCATCGAGAAGAGTTGCAATGAGCTT 560
| || | | ||| || ||||||||||||||| |||||| ||||||||||| |||| ||||
Sbjct 833 GTGCAATGCTGTCTGCACCCTGGTTTCGTTAGGGGCATTGAGAAGAGTTGTAATGTGCTT 892
Query 561 CTACTCGAAGTTGAGCCGAGGCAAGAGAAG-AGTTCGT-CTAATGAGATTGAGAGAAAAG 618
||||| || |||||| |||||| ||||||| |||| || | ||||||||||| | ||
Sbjct 893 CTACTTGAGGTTGAGACGAGGCGAGAGAAGAAGTT-GTGC-AATGAGATTGA-TG---AG 946
Query 619 ACTCAAGAAAAGAGTTATCGGGGAAAATAAATGAGGGAGGGGTT-CCATTT-GGAAATCT 676
||| | ||| | || | | | | ||| ||| |||||| | ||| ||
Sbjct 947 ACT--------GTGTTGT--TGG--TAGAGACGGGGGTTCAGTTACCATTTCGCAAA-CT 993
Query 677 AGGC-TTTAGTGATAGAAGGAGCTTACTTGATATAGTGGCAAACCA-TGTAAGTCTACGT 734
| | |||||| ||||||||| |||||| | |||||| | || || ||| || ||| |
Sbjct 994 A-CCATTTAGTTATAGAAGGAATTTACTTCACATAGTGAC-AAGCACTGTTGGTATACCT 1051
Query 735 GT-CGGTGAACCATTAAGAGGAAAGTTATTTCCCACCAGGTCGAAAGATGATGACGAAGC 793
|| | ||| | || ||| | |||||||||||| | | ||| ||| | ||||| |||||
Sbjct 1052 GTAC-CTGATCTATCAAGTGAAAAGTTATTTCCTA-C--GTC-AAA-A-GATGATGAAGC 1104
Query 794 GGTGTTGTTGGAACGCAGAACCATGCTCCTTAAAATGCTCAAATTTGGTGG-GAACTGGA 852
||||||||||||||||||||||||||| |||||||||| ||| |||||||| || ||||
Sbjct 1105 GGTGTTGTTGGAACGCAGAACCATGCTTCTTAAAATGCACAAGTTTGGTGGTGAT-TGGA 1163
Query 853 AGCACATGAATTTGGAGGAGGA-TGATCAGCTATATTATAATCCTA-TGCAGGTAGACAT 910
| |||||||| ||||||| || || || | | || || ||| | | |||||||||||
Sbjct 1164 ATCACATGAACCTGGAGGATGAGTG--CA-CAA-AT-AT--TCCAAAT-CAGGTAGACAT 1215
Query 911 AAATGAGATA-TGGGAAA-ATCTCGGTGAT-AA--C-AC-T--GACATCATGGACGATAG 961
||| | || ||| || |||| ||| | || | | | | || |||||||| | |
Sbjct 1216 AAACAA-ATCGTGG-AAGCATCTAGGTTTTGAAGGCGATATTCG-CAACATGGACGCT-G 1271
Query 962 AGAGTATCAGAGAGAGGCTACACCAAGGAAGAAGAGCTTTAGCATGTTTTTCATAAGTGG 1021
||| |||||| | ||| |||||||| | |||||| | || ||||| ||||||
Sbjct 1272 AGA--ATCAGA------C-ACA--AAGGAAGA-G--CTTTAGTAGGTATTTCAGAAGTGG 1317
Query 1022 CATCATGCATATTCTTGGGAAGTCTAGTCCTG-AAGAGAACACGCCGCGGCCTTCGAGCA 1080
||| | ||||||||| |||| ||||||| || || |||||| | | | ||| || |
Sbjct 1318 CATAAAGCATATTCTCGGGAGGTCTAGTTCTTCAA-AGAACATGTCTT--C-TTCAAGAA 1373
Query 1081 GTGAGATTAGACGTTCGAATCGCCAAACCTTTCTTAGCTCTGGTGATACATTCGGCCTTA 1140
|||||| ||||| || ||||| ||||| ||||||| | ||||||| || | || ||||
Sbjct 1374 GTGAGACTAGACCTTTGAATCTCCAAAAGTTTCTTAATTTTGGTGATTCAATAGGTCTTA 1433
Query 1141 GTCTCAAAGCTTCCTACACTGAGATGTCTTCTTACCAAGGGTGGCCAATCATGTCCCAAA 1200
|||||||||||||| | | | || |||||||||||||||| ||||||| |||| | |||
Sbjct 1434 GTCTCAAAGCTTCCAATATTAAGTTGTCTTCTTACCAAGGTTGGCCAAACATGGACGAAA 1493
Query 1201 ACCGCTTTT-CCCTTCATAAACTACCAATGAAGAATCCCATCAATAATCAA-GAGTATGC 1258
||| || | ||||| |||| ||||| || ||| |||||||| ||| | | ||||||||
Sbjct 1494 CCCG-TTATGCCCTTTATAAGCTACCGATTAAGGATCCCATCGCTAA-CGATGAGTATGC 1551
Query 1259 CGGTTTGTGGGGAGGAACGTTTGGCTGGCCACCTGAGCAA-TGT-CGAGAAGATAAGTCC 1316
||| || ||||||||||| |||||||||||||| | | || ||| | ||||||||| ||
Sbjct 1552 CGGGTTATGGGGAGGAACTTTTGGCTGGCCACCAG-GAAAATGTAC-AGAAGATAAA-CC 1608
Query 1317 AGA-AAGGCTCTATT-CTTACTGATGCTCACTTATAAAGAATCTGAGGA-GAATAGTGAG 1373
|| |||||| | || || |||||||||| ||||| |||||||| | || | || ||||
Sbjct 1609 AGGGAAGGCTTTTTTTCT-ACTGATGCTCTCTTATGAAGAATCTCAAGATGG-TACTGAG 1666
Query 1374 AGAGTTCTCATTGGGACGAAAATACTTGAAGG 1405
||| |||| || ||||| |||||||| |||||
Sbjct 1667 AGACTTCTTATAGGGACAAAAATACTCGAAGG 1698
> AT5G39470.1 | Symbols: | F-box family protein | chr5:15791952-15793062
REVERSE LENGTH=513
Length=513
Score = 202 bits (109), Expect = 9e-51
Identities = 145/163 (89%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 40 TTGGTGCTTGCTTGCTTCTTACGCTTCCCCAATATGTGTTTGCTGTTATCTCACGTTTTC 99
||||||||||||||||||||||||||||| || |||||||| |||||||||| | ||||
Sbjct 272 TTGGTGCTTGCTTGCTTCTTACGCTTCCCGAAGATGTGTTTTCTGTTATCTCTCACTTTC 331
Query 100 TTTCTCCAAGCGACATTTGCAATCTGATCTTGTGCGGTAAAAGTATTTGTGCCCTTGTCC 159
|||||||||||||||||||| || | ||||| ||| | |||||| ||||||||||||||
Sbjct 332 TTTCTCCAAGCGACATTTGCGATATAATCTTTTGCTGCAAAAGTCTTTGTGCCCTTGTCG 391
Query 160 ATTCCGACAAGACATGGCTTGTGCAATGTGAAGTCGTAAAGGT 202
||||||| |||||||||||||| |||| ||||||||| |||||
Sbjct 392 ATTCCGAGAAGACATGGCTTGTTCAATATGAAGTCGTTAAGGT 434
Score = 78.7 bits (42), Expect = 2e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 277 AGGTGGTGAAGCCGCTTGTTGGGATTTGGGTTCAAAAGAACCCTG 321
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 431 AGGTGGTGAAGCCTCTTGTTGGGATTTGGGTTCAAAAGAACCCTG 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72991592430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5