BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947869
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39460.1 | Symbols: | F-box family protein | chr5:15788289-... 1271 0.0
AT5G39480.1 | Symbols: | F-box family protein | chr5:15801635-... 976 0.0
AT5G39490.1 | Symbols: | F-box family protein | chr5:15805808-... 937 0.0
AT5G39470.1 | Symbols: | F-box family protein | chr5:15791952-... 224 2e-57
> AT5G39460.1 | Symbols: | F-box family protein | chr5:15788289-15790004
REVERSE LENGTH=1716
Length=1716
Score = 1271 bits (688), Expect = 0.0
Identities = 896/996 (90%), Gaps = 15/996 (2%)
Strand=Plus/Plus
Query 656 AGGGGTTCCATTTGGAAATCTAGACTTTAGTGATAGAGTAAACTTGCTTGATATAGTGAC 715
||||| |||||||||| |||||||||| ||||||||| | ||||| || |||||||||||
Sbjct 600 AGGGGATCCATTTGGAGATCTAGACTTCAGTGATAGAATGAACTTACTAGATATAGTGAC 659
Query 716 AAACCATGTAAGTCTACGAGTCGGTGAACCATTAACAGG-AATGTTATTTCCCACCAGGT 774
||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 660 AAAACATGTAAGTCTACGAGTCGATGAACCATTAACAGGAAAT-TTATTTCCCACCAGGT 718
Query 775 CCAAAGATGATGAAGCAATGATGTTTGAACGCAGAACCATGCTCCTTAAAATGCTCAAAT 834
| ||| |||| ||||| |||||||| |||||||||| |||||||||||||||||||||||
Sbjct 719 CAAAATATGACGAAGCGATGATGTTGGAACGCAGAAACATGCTCCTTAAAATGCTCAAAT 778
Query 835 TTGGTGGAAACTGGAAGCACCTGAACTTGGAGGAGAATGAGCAGTTGTGTTACAATCATA 894
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct 779 TTGGTGGAAACTGGAAGCACATAAACTTGGAGGAGGATGAGCAGTTGTGTTACAATCATA 838
Query 895 TACAGATAGACATAAACAAACTGTGGGAAAATCTCGGTGATGACATTGACGACATGGAGG 954
|| ||||||||||||| ||| ||| ||||||||| ||||||||||||||| |||||||||
Sbjct 839 TAGAGATAGACATAAAAAAATTGTTGGAAAATCTTGGTGATGACATTGACAACATGGAGG 898
Query 955 ATATAGAGGAGCAGAGAGAGGTTACACCAAAGAAGAAGAGCTTTAGCAGGTTTTTTAGAA 1014
|||||||||| |||| |||||||||||||| ||||||||||||| || ||||||| ||||
Sbjct 899 ATATAGAGGATCAGATAGAGGTTACACCAAGGAAGAAGAGCTTTCGCCGGTTTTTAAGAA 958
Query 1015 GTGGCATCAAACATATTCTTGGGAAGTCCAGTTCTTCAAAGATCAAGCCGCCTTCGAGCA 1074
||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 959 GTGGCATTAAACATATTCTTGGGAAGTTCAGTTCTTCAAAGATCAATTCGCCTTCGAGCA 1018
Query 1075 GTGAGATTAGACGTTCGAATCGCCAAAGCTTTCTTAGCTCTGGTGATACATTTGGCCTTA 1134
|||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct 1019 GTGAGACAAGACGTTCGAATCGCCAAAGCTTTCTCAGCTCTGGTAATACATTTTGCCTTA 1078
Query 1135 GTCTCAAAGCTTCATGCACTTGGGTGTCTTTTTACGAAGGGTGGCCAATCATGTGCGCAA 1194
|||| |||||||||||||||| | |||||| || |||||||||||||||||| |||||
Sbjct 1079 GTCTTAAAGCTTCATGCACTTTGATGTCTTCATATGAAGGGTGGCCAATCATGAGCGCAG 1138
Query 1195 ACAGCTTTTCCCTTTATAAACTACCAATGAAGAATCC-CATCGATAATC-AAGAGTATGC 1252
||| |||||||||| ||||||||||||||||||| || | ||||| | | | | ||||||
Sbjct 1139 ACAACTTTTCCCTTCATAAACTACCAATGAAGAAACCTC-TCGATCA-CGACGTGTATGC 1196
Query 1253 CGGTTTGTGGGGAGGAACGTTTGGCTGGCCACCTGGGAAATATATTGAAGGTAAGGCTCT 1312
||||||||||||||||||||||||||||| ||||||||| ||||||||| | || | ||
Sbjct 1197 GGGTTTGTGGGGAGGAACGTTTGGCTGGCCCCCTGGGAAAGATATTGAAGATGAGTCCCT 1256
Query 1313 TTTCTTACTAATGCTCACTTATGGAGAATCTGAAGTGGGTAGTGAGAGAGTTCTTTTCGG 1372
| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1257 TCTCTTATTAATGCTCACTTATGGAGAATCTGAAGAGGGTAGTGAGAGAATTCTTTTCGG 1316
Query 1373 GACGAAAATACTCGAAGGCTATAACTCTGCGGGGCGTCCCAATGGATCCTCAATGTTTGT 1432
||||||||||||| | | | | | | ||| | || ||| ||||||||||||||||||||
Sbjct 1317 GACGAAAATACTC--A-G-T-T-ATTTTGCTGAGCATCCTAATGGATCCTCAATGTTTGT 1370
Query 1433 TGTAAATATTGACACGCCTTCCCTTGAGCCCTTTCCATTTGATACCGATGGAAGATATTT 1492
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 1371 TGTAAATATTGACACGCCTTCCCTTGAGCCGTTTCCATTTGATACAGATGGAAGAGATTT 1430
Query 1493 CGAGCAATCTTACATGGGAGAGGGTATCGCAGACGGTTATGGATTCCGCTATCCCGGTTC 1552
|||||| ||||||| ||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1431 CGAGCATTCTTACACGGGAGAGGGTATCGCTGACGGTTATGGATTCCGATACCCCGGTTC 1490
Query 1553 AAAACCTGGTTCCCTTTTTGTAATCTCTAATGGTCTTCTTGCATTTGTT-GGCAAGAGAC 1611
|||||||||||||||||| |||| |||||||| |||||||||||| ||| |||||| ||
Sbjct 1491 AAAACCTGGTTCCCTTTTCGTAAGCTCTAATGATCTTCTTGCATTCGTTTGGCAAG-GAA 1549
Query 1612 CA-AAGATGTGATTACATTGCAAAGAGTAAACCTTG 1646
| ||||||||||||||||||||||| |||||||||
Sbjct 1550 CTGAAGATGTGATTACATTGCAAAGAATAAACCTTG 1585
Score = 817 bits (442), Expect = 0.0
Identities = 551/603 (91%), Gaps = 10/603 (2%)
Strand=Plus/Plus
Query 21 ATGATGAATAAGGAATCGTTTGGTGCTTGCTTGCTTCTTACGCTTCCCCAAGATGTTTTT 80
|||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 1 ATGATGAACAAGGAATCGTTTGGAGCTTGCTTGCTTCTTACGCTTCCCGAAGATGTGTTT 60
Query 81 GCTGTTATCTCACGCTTTCTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAA 140
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTGTTATCTCTCGTTTTCTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAA 120
Query 141 AGTATTTGTGCCCTTGTTGATTCCGAGAAGACATGGCTTGTGCAATGTGAAGTCGTAAAG 200
||| ||||||||||||| |||||||||||||| ||||||||||||||||||| |||||
Sbjct 121 AGTCTTTGTGCCCTTGTCGATTCCGAGAAGACGTGGCTTGTGCAATGTGAAGAAGTAAAA 180
Query 201 GTTATTCCTTTGTTTGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCGCTT 260
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTTCTTCCTTTGATTGAACTAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTT 240
Query 261 TGTAGGTTCCTTGTAGAGGTGGTGAAGCCTCTTGTTGGGATTTGGGTTCAACAGAACCCT 320
|||||||| ||||| |||||||||||||| ||| ||||||||||||| ||| | ||||||
Sbjct 241 TGTAGGTTTCTTGTGGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAAGAAAACCCT 300
Query 321 GAACTTGGGAATGTCGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGATGCCGGATA 380
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GAACTTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATA 360
Query 381 ATTCCTCAAGAAG-TTGGTCCTTTGTGGATTCAAGAAGGACAACTTGTGTGGTCACCGGT 439
||||| ||| ||| ||| |||||||||||||||||| || ||| | ||||||||||||
Sbjct 361 ATTCCACAA-AAGGTTGCTCCTTTGTGGATTCAAGAGGGCCAAGTCAAGTGGTCACCGGT 419
Query 440 GTTTGAGATAATCTGCGG-TGTTGATGGCTCTAACGGGTTTTTTC-TCCATGGAAGAGAC 497
|||||||||||| ||||| | ||||||||||||| |||||||||| ||||||||||||||
Sbjct 420 GTTTGAGATAATTTGCGGCT-TTGATGGCTCTAA-GGGTTTTTTCCTCCATGGAAGAGAC 477
Query 498 AAAGAAGGCAGTTGCTTGTACCCTGGTTTTGTTATCGG-CATCGAGAAGAGTTGCAATGA 556
||| |||| |||| ||| ||||||||||| ||||| || ||||||||||||||||||||
Sbjct 478 AAACAAGGTAGTTTCTTATACCCTGGTTTCGTTAT-GGACATCGAGAAGAGTTGCAATGT 536
Query 557 GCTTCTACTCGAAGTTGAGCCGAGG-CAAGAGAAGAGTTTGTGCAATGAGATTGAGAAAG 615
||||||||||||||||||||||||| || |||||||||| ||||||||||||||||| ||
Sbjct 537 GCTTCTACTCGAAGTTGAGCCGAGGTCA-GAGAAGAGTTCGTGCAATGAGATTGAGAGAG 595
Query 616 AAG 618
|||
Sbjct 596 AAG 598
> AT5G39480.1 | Symbols: | F-box family protein | chr5:15801635-15803341
REVERSE LENGTH=1707
Length=1707
Score = 976 bits (528), Expect = 0.0
Identities = 807/934 (86%), Gaps = 49/934 (5%)
Strand=Plus/Plus
Query 21 ATGATGAATAAGGAATCGTTTGGTGCTTGCTTGCTTCTTACGCTTCCCCAAGATGTTTTT 80
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |||
Sbjct 1 ATGATGAACAAGGAATCGTTTGGAGCTTGCTTGCTTCTTACGCTTCCAGAAGATGTGTTT 60
Query 81 GCTGTTATCTCACGCTTTCTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAA 140
|||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GCTGTTATTTCTCGTTTTCTTTCTCCAAGCGATATTTGCAATCTAATCTTGTGCGGCAAA 120
Query 141 AGTATTTGTGCCCTTGTTGATTCCGAGAAGACATGGCTTGTGCAATGTGAAGTCGTAAAG 200
||| | ||||||||| ||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 121 AGTCTGCCTGCCCTTGTCGATACCGAGAAGATGTGGCTTGTGCAATGTGAAGAAGTAAAG 180
Query 201 GTTATTCCTTTGTTTGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCGCTT 260
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTTCTTCCTTTGTTGGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTT 240
Query 261 TGTAGGTTCCTTGTAGAGGTGGTGAAGCCTCTTGTTGGGATTTGGGTTCAACAGAACCCT 320
|||||||| |||||||||||||||||||| ||| ||||||||||||| ||||| ||||||
Sbjct 241 TGTAGGTTTCTTGTAGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAACAAAACCCT 300
Query 321 GAACTTGGGAATGTCGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGATGCCGGATA 380
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GAACTTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATA 360
Query 381 ATTCCTCAAGAA-GTTGGTCCTTTGTGGATTCAAGAAGGA-CAACTTGTGTGGTCACCGG 438
||||| ||| || |||| ||||| ||||||||||| |||| | | || |||||||||||
Sbjct 361 ATTCCACAA-AAGGTTGCTCCTTCGTGGATTCAAG-AGGACCGAGTTAAGTGGTCACCGG 418
Query 439 TGTTTGAGATAATCTGC-GGTGTTGATGGCTCTAACGGGTTTTTTCTCCATGGAAGAGAC 497
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 419 TGTTTGAGATAATCTGCGGGT-TTGATGGCTCTAACGGGTTTTTCCTCCATGGAAGAGAC 477
Query 498 AAAGAAGGCAGTTGCTTGTACCCTGGTTTTGTTATCGGCATCGAGAAGAGTTGCAATG-A 556
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct 478 AAAGAAGGCAGTTGCTTGTACCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGCAATGTA 537
Query 557 GCTTCTA-CTCGAAGTTGAGCCGAGGCAAGAGAAGAGTTTGTGCAATGAGATTGAGAAAG 615
|||| | ||||| |||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 538 -CTTC-AGCTCGATGTTGTGCCGAGGCAAGAGAAGAGTTCGTGCAATGAGATTGAGAGAG 595
Query 616 AAGACTCAAGAAAAGAGTTATCGGGTAAAATAAGCGAGGGAGGGGTTCCATTT-GGAAAT 674
|| ||||||| | | | | ||| | | || | |||||||| |||
Sbjct 596 GAGCCTCAAGAGA-G-G--A--GGG-A------G--AG--A----TTCCATTTTGGATG- 633
Query 675 CTAGACTTT-AGTGATAGAGTAAACTTGCTTGATATAGTGACAAACCATGTAAGTCTACG 733
|| | |||| ||||||||| ||| ||||| |||| ||||||| ||||||||||||||
Sbjct 634 CTCG-CTTTTAGTGATAGAAAAAATTTGCTCAATATTGTGACAAGCCATGTAAGTCTAC- 691
Query 734 A-GTCGGTG-AACCATTAACAGGAA-TGTTATTTCCCACCAGGTCCAAAGATGATGAAGC 790
| || |||| ||||||||| | ||| ||||||||||||| | | ||| ||||||||||
Sbjct 692 ATGT-GGTGGAACCATTAA-ATGAAATGTTATTTCCCAC-AT-TG-AAATATGATGAAGC 746
Query 791 AATGATGTTTGAACGCAGAACCATGCTCCTTAAAATGCTCAAATTTGGTGGAAACTGGAA 850
|||| || |||||||||||||||| ||||||||||||| ||| ||||||||||| |||||
Sbjct 747 AATGCTGGTTGAACGCAGAACCATTCTCCTTAAAATGCACAAGTTTGGTGGAAATTGGAA 806
Query 851 GCACCTGAACTTGGAGGAGAATGAGCAGTTGTGTTACAATCATATACA-GATAGACATAA 909
| || |||| ||||||||| |||| |||||||||||||||| || || | || | ||||
Sbjct 807 GAACATGAATTTGGAGGAGGATGATCAGTTGTGTTACAATCCCATGCAAG-TAAAAATAA 865
Query 910 ACAA-ACTGTGGGAAAATCTCGGTGATGAC-ATT 941
|| | | ||| ||||||||||||||||||| |||
Sbjct 866 ACGAGA-TGTTGGAAAATCTCGGTGATGACTATT 898
Score = 435 bits (235), Expect = 9e-121
Identities = 506/633 (80%), Gaps = 34/633 (5%)
Strand=Plus/Plus
Query 1035 GGGAAGTCCAGTTCTTCAAAGATCA-AGCCGCCTTCG-AGCAGTGAGATTAGACG-TTCG 1091
||| |||| ||||||||||||| || | | |||||| || ||||| |||||| | ||||
Sbjct 955 GGGGAGTCTAGTTCTTCAAAGAACACA-ACACCTTCGCAG-AGTGAAATTAGA-GTTTCG 1011
Query 1092 AATCGCCAAAGCTTTCTTAGCTCTGGTGATACATTTGGCCTTAGTCTCAAAGCTTCATGC 1151
||||||||||||||||||||||||||||||||||| || ||| |||||| |||||| | |
Sbjct 1012 AATCGCCAAAGCTTTCTTAGCTCTGGTGATACATTCGGTCTTGGTCTCACAGCTTCCTAC 1071
Query 1152 ACTTGGG-TGTCTTTTTACGAAGGGTGGCCA-ATCATGTGCGCAAAC-AGCTTTTCCCTT 1208
| | | | |||||| ||| ||||||||||| | |||| | || | ||||| |||
Sbjct 1072 AGT-GAGATGTCTTATTATAAAGGGTGGCCATA-CATGCACTTTCACCA-CTTTTTACTT 1128
Query 1209 TATAAACTACCAATGAAGAATCCCATCGAT-AATCAAGAGTATGCCGGTTTGTGGGGAGG 1267
|||||||||||| | ||||| || ||||| || ||| |||||| ||||||||||||||
Sbjct 1129 TATAAACTACCAGTTAAGAAAGCCGTCGATCAAG-AAGCGTATGCTGGTTTGTGGGGAGG 1187
Query 1268 AACGTTTGGCTGGCCACCTGGGAAATATATTGAAGGTAAGGC-------TCT-TTT-CTT 1318
|||| ||||||| ||| ||||||||| | | |||||||| | ||| ||| |||
Sbjct 1188 AACGATTGGCTGCCCAGCTGGGAAATGTCCTAAAGGTAAGACGGAAAAGTCTCTTTACTT 1247
Query 1319 ACTAATGCTCACTTATGGAGAATCTGAAGTGGGTAGTGAGAGAGTTCTT-TTCGGGACGA 1377
||| ||||||||||||| ||||||||||| ||||||||||||||| || ||||| |
Sbjct 1248 ACTGATGCTCACTTATGAAGAATCTGAAGAACATAGTGAGAGAGTTCTCATT-GGGACAA 1306
Query 1378 AAATACTCGAAGGCTATAACTCTGCGGGGCGTCCCAATGGATCCT-CAATGTTTGTTGTA 1436
||||||||||||| | || || | | | |||||||||| | | ||||||||||||||
Sbjct 1307 AAATACTCGAAGGAAAGCGCTATGTGCGTCATCCCAATGGAAC-TGCAATGTTTGTTGTA 1365
Query 1437 AATATTGACACGCCTTCCCTTGAGCCCTTTCCATTTGATACCGATGGAAGATATTTCGAG 1496
|| || || || ||||| ||||| ||||||||| | ||| | ||| || | |||| |||
Sbjct 1366 AAGATCGATACACCTTCTCTTGATCCCTTTCCAGTGGATGCAAATGAAACACATTTTGAG 1425
Query 1497 CAAT-CTTACAT-GGGAGAGGGTATCGCAGACGGTTATGGATTCCGCTATCCCGGTTCAA 1554
||| ||||| | |||||| ||||||||||| |||||| |||||||||| | ||||| |
Sbjct 1426 -AATTCTTAC-TCGGGAGAAGGTATCGCAGAGGGTTATTCATTCCGCTATACAGGTTCTA 1483
Query 1555 AACCTGGTTCCCTTTTTGTAATCT-CTAATGGTCTTCTTGCATTTGTT-GGCAAGAGACC 1612
|||| ||||||||||| || || | |||||| |||||| ||||| ||| || |||| |||
Sbjct 1484 AACCCGGTTCCCTTTTCGTGAT-TACTAATGATCTTCTCGCATTCGTTTGGAAAGAAACC 1542
Query 1613 AAAGATGTGATTACATTGCAAAGAGTAAACCTT 1645
|||| ||||||||| ||||||||| ||||||||
Sbjct 1543 AAAGTTGTGATTACGTTGCAAAGACTAAACCTT 1575
> AT5G39490.1 | Symbols: | F-box family protein | chr5:15805808-15807508
REVERSE LENGTH=1701
Length=1701
Score = 937 bits (507), Expect = 0.0
Identities = 796/928 (86%), Gaps = 50/928 (5%)
Strand=Plus/Plus
Query 24 ATGAATAAGGAATCGTTTGGTGCTTGCTTGCTTCTTACGCTTCCCCAAGATGTTTTTGCT 83
||||| | ||||| |||||||||||||||||||||| |||||| ||||| | |||| |
Sbjct 1 ATGAACACGGAATTATTTGGTGCTTGCTTGCTTCTTATGCTTCCAGAAGATATCTTTGTT 60
Query 84 GTTATCTCACGCTTTCTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAAAGT 143
|||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 61 GTTATCTCTCGTTTTCTTTCTCCAAGCGATATTTGCAACCTAATCTTGTGCGGCAAAAGT 120
Query 144 ATTTGTGCCCTTGTTGATTCCGAGAAGACATGGCTTGTGCAATGTGAAGTCGTAAAGGTT 203
|| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CTTCGTGCCCTTGTCGATTCCGAGAAGACATGGCTTGTGCAATGTGAAGAAGTAAAGGTT 180
Query 204 ATTCCTTTGTTTGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCGCTTTGT 263
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CTTCCTTTGTTGGAAATAGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTTTGT 240
Query 264 AGGTTCCTTGTAGAGGTGGTGAAGCCTCTTGTTGGGATTTGGGTTCAACAGAACCCTGAA 323
||||| |||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||
Sbjct 241 AGGTTTCTTGTAGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAACAAAACCCTGAA 300
Query 324 CTTGGGAATGTCGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGATGCCGGATAATT 383
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 CTTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATAATT 360
Query 384 CCTCAAGAA-GTTGGTCCTTTGTGGATTCAAGAAGGA-CAACTTGTGTGGTCACCGGTGT 441
|| ||| || |||| ||||| ||||||||||| |||| | | || ||||||||||||||
Sbjct 361 CCACAA-AAGGTTGCTCCTTCGTGGATTCAAG-AGGACCGAGTTAAGTGGTCACCGGTGT 418
Query 442 TTGAGATAATCTGC-GGTGTTGATGGCTCTAACGGGTTTTTTCTCCATGGAAGAGACAAA 500
|||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 TTGAGATAATCTGCGGGT-TTGATGGCTCTAACGGGTTTTTCCTCCATGGAAGAGACAAA 477
Query 501 GAAGGCAGTTGCTTGTACCCTGGTTTTGTTATCGGCATCGAGAAGAGTTGCAATG-AGCT 559
|||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||| | ||
Sbjct 478 GAAGGCAGTTGCTTGTACCCTGGTTTTGTTATGGGCATTGAGAAGAATTGCGATGTA-CT 536
Query 560 TCTA-CTCGAAGTTGAGCCGAGGCAAGAGAAGAGTTTGTGCAATGAGATTGAGAAAGAAG 618
|| | |||||||||| |||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 537 TC-AGCTCGAAGTTGTGCCGAGGCAAGAGAAGAGTTCGTGCAATGAGATTGAGAGAGGAG 595
Query 619 ACTCAAGAAAAGAGTTATCGGGTAAAATAAGCGAGGGAGGGGTTCCATTT-GGAAATCTA 677
||||||||| | | | ||| | | || | |||||||| ||| ||
Sbjct 596 CCTCAAGAAA-G-G--A--GGG-A------G--AG--A----TTCCATTTTGGATG-CTC 633
Query 678 GACTTT-AGTGATAGAGTAA-ACTTGCTTGATATAGTGACAAACCATGTAAGTCTACGA- 734
| |||| || |||||| || ||||||| |||| || |||||||||||| |||||| |
Sbjct 634 G-CTTTTAGCGATAGAA-AACACTTGCTCAATATTGTCACAAACCATGTAGGTCTAC-AT 690
Query 735 GTCGGTG-AACCATTAACAGGAA-TGTTATTTCCCACCAGGTCCAAAGATGATGAAGCAA 792
|| |||| ||||||||| | ||| ||||||||||||| | | ||||||||||||| ||
Sbjct 691 GT-GGTGGAACCATTAA-ATGAAATGTTATTTCCCAC-AT-TG-AAAGATGATGAAGTAA 745
Query 793 TGATGTTTGAACGCAGAACCATGCTCCTTAAAATGCTCAAATTTGGTGGAAACTGGAAGC 852
| || ||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||
Sbjct 746 AGCTGAATGAACGCAGAACCATTCTCCTTAAAATGCACAAGTTTGGTGGAAATTGGAAGA 805
Query 853 ACCTGAACTTGGAGGAGAATGAG-CAGTTGTGTTACAATCATATACAGATAGACATAAAC 911
|| |||| ||||||||| ||| | |||||| ||||||||| || ||| || | ||||||
Sbjct 806 ACATGAATTTGGAGGAGGATG-GTCAGTTGAGTTACAATCCCATGCAGGTAAAAATAAAC 864
Query 912 AA-ACTGTGGGAAAATCTCGGTGATGAC 938
| | ||| ||||||||||| |||||||
Sbjct 865 GAGA-TGTTGGAAAATCTCGATGATGAC 891
Score = 427 bits (231), Expect = 1e-118
Identities = 506/633 (80%), Gaps = 42/633 (7%)
Strand=Plus/Plus
Query 1036 GGAAGTCCAGTTCTTCAAAGATCA-AGCCGCCTTCG-AGCAGTGAGATTAGACGTTCGAA 1093
||||||| ||||||||||||| || | | |||||| || ||||| ||||||| ||||||
Sbjct 956 GGAAGTCTAGTTCTTCAAAGAACACA-ACACCTTCGCAG-AGTGAAATTAGACATTCGAA 1013
Query 1094 TCGCCAAAGCTTTCTTAGCTCTGGTGATACATTTGGCCTTAGTCTCAAAGCTTCATGCAC 1153
|||| |||||||||||||||||||||||||||| || ||| | ||||||||||| | |||
Sbjct 1014 TCGCAAAAGCTTTCTTAGCTCTGGTGATACATTCGGTCTTGGACTCAAAGCTTCCTACAC 1073
Query 1154 TTG-GGTGTCTTTTTACGAAGGGTGGCCA-ATCATGTGCGCA-AACAGCTTTTCCCTTTA 1210
|| | |||||| ||| ||||||||||| | ||||| || | | || ||||| || ||
Sbjct 1074 -TGAGATGTCTTATTATAAAGGGTGGCCAGA-CATGTACGTACACCA-CTTTTTACTCTA 1130
Query 1211 TAAACTACCAATGAAGAATCCCATCGATAATC-AAGA-GTATGCCGGTTTGTGGGGAGGA 1268
|||||||||| | ||||| || ||||| | | || | |||||| |||||||||||||||
Sbjct 1131 TAAACTACCAGTTAAGAAAGCCGTCGATCA-CGAA-ACGTATGCTGGTTTGTGGGGAGGA 1188
Query 1269 ACGTTTGGCTGGCCACCTGGGAAATATATTGAAGGTAAGGC-------TCT-TTT-CTTA 1319
||||||||||||||| |||| |||| | | |||||||| | ||| ||| ||||
Sbjct 1189 ACGTTTGGCTGGCCAGCTGGAAAATGTCCTAAAGGTAAGACGGAAAAGTCTCTTTACTTA 1248
Query 1320 CTAATGCTCACTTATGGAGAATCTGAAGTGGGTAGTGAGAGAGTTCTT-TTCGGGACGAA 1378
|| ||||||||||||| | || ||| | ||||||||||||||| || ||||| ||
Sbjct 1249 CTGATGCTCACTTATGAAAAA---GAA-TA--TAGTGAGAGAGTTCTCATT-GGGACAAA 1301
Query 1379 AATACTCGAAGGCTATAACTCT-GCGGGGCGTCCCAATGGATCCT-CAATGTTTGTTGTA 1436
|||||| ||||| || | || | | | |||||||||||| | | ||||||||||||||
Sbjct 1302 AATACTGGAAGGAAATCGC-CTTGTGAGCCGTCCCAATGGAAC-TACAATGTTTGTTGTA 1359
Query 1437 AATATTGACACGCCTTCCCTTGAGCCCTTTCCATTTGATACCGATGGAAGATATTTCGAG 1496
|| || || || ||||| ||||||||||||||| | ||| | |||| || | |||| |||
Sbjct 1360 AAAATCGATACACCTTCTCTTGAGCCCTTTCCAGTGGATGCAGATGAAATACATTTTGAG 1419
Query 1497 CAAT-CTTACAT-GGGAGAGGGTATCGCAGACGGTTATGGATTCCGCTATCCCGGTTCAA 1554
||| ||||| | |||| | ||| || |||| ||||||||||||||||||| |||||| |
Sbjct 1420 -AATTCTTAC-TCGGGAAAAGGTGTCACAGATGGTTATGGATTCCGCTATCTCGGTTCTA 1477
Query 1555 AACCTGGTTCCCTTTTTGTAATCTCTAATGGTCTTCTTGCATTTGTT-GGCAAGAGACCA 1613
|||| ||||||||||| || ||| |||||| | |||||||||| ||| || |||| ||||
Sbjct 1478 AACCCGGTTCCCTTTTCGTGATCACTAATGATTTTCTTGCATTCGTTTGGAAAGACACCA 1537
Query 1614 AAGA-TGTGATTACATTGCAAAGAGTAAACCTT 1645
|| | | ||||||| ||||| ||| ||||||||
Sbjct 1538 AA-ACTATGATTACGTTGCATAGACTAAACCTT 1569
> AT5G39470.1 | Symbols: | F-box family protein | chr5:15791952-15793062
REVERSE LENGTH=513
Length=513
Score = 224 bits (121), Expect = 2e-57
Identities = 150/164 (91%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 40 TTGGTGCTTGCTTGCTTCTTACGCTTCCCCAAGATGT-TTTTGCTGTTATCTCACGCTTT 98
||||||||||||||||||||||||||||| ||||||| |||| |||||||||| | ||||
Sbjct 272 TTGGTGCTTGCTTGCTTCTTACGCTTCCCGAAGATGTGTTTT-CTGTTATCTCTCACTTT 330
Query 99 CTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAAAGTATTTGTGCCCTTGTT 158
||||||||||||||||||||| || ||||||| ||| |||||||| |||||||||||||
Sbjct 331 CTTTCTCCAAGCGACATTTGCGATATAATCTTTTGCTGCAAAAGTCTTTGTGCCCTTGTC 390
Query 159 GATTCCGAGAAGACATGGCTTGTGCAATGTGAAGTCGTAAAGGT 202
||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 391 GATTCCGAGAAGACATGGCTTGTTCAATATGAAGTCGTTAAGGT 434
Score = 84.2 bits (45), Expect = 4e-15
Identities = 52/55 (95%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 277 AGGTGGTGAAGCCTCTTGTTGGGATTTGGGTTCAACAGAACCCTG-AACTTGGGA 330
||||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 431 AGGTGGTGAAGCCTCTTGTTGGGATTTGGGTTCAAAAGAACCCTGTAA-TTGGGA 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81324882900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5