BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947871
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39440.1 | Symbols: SnRK1.3 | SNF1-related protein kinase 1.... 1005 0.0
> AT5G39440.1 | Symbols: SnRK1.3 | SNF1-related protein kinase
1.3 | chr5:15781907-15784699 FORWARD LENGTH=1485
Length=1485
Score = 1005 bits (544), Expect = 0.0
Identities = 780/890 (88%), Gaps = 31/890 (3%)
Strand=Plus/Plus
Query 21 ATGGAGGGATCATC-GAGAAAGACTACTAGTAGAA--AGAAATCAG-TTCTACCAAACTA 76
||||| |||||||| || ||| ||||| | || || || ||| | |||||||||| ||
Sbjct 1 ATGGATGGATCATCGGA-AAAAACTACCAATA-AATTAG-TATC-GATTCTACCAAATTA 56
Query 77 TATGATTGGTAAAACACTTGGGCATGGATCATTTGCAAAAGTGAAATTAGCGGTGCATGT 136
|| ||||||||| || ||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct 57 TAGGATTGGTAAGACTCTTGGACATGGATCCTTTGCGAAAGTGAAATTAGCACTGCATGT 116
Query 137 AGCTACTGGGCACAACGTTGCTATCAAAA-TCTTTGATCGTCT-TAAGATTAAGAAAATG 194
||||||||| ||||| ||||||||||||| || || |||| || |||||||||||| |||
Sbjct 117 AGCTACTGGTCACAAAGTTGCTATCAAAATTC-TTAATCG-CTCTAAGATTAAGAACATG 174
Query 195 GACGTA--GACATCAAAGTGCAAAGGGAGATCAAAATTCTTAGACTGTTGATGCATCCTC 252
| ||| || |||||||| |||||||||||||||||||| ||| | |||||||||||||
Sbjct 175 G--GTATTGAGATCAAAGTACAAAGGGAGATCAAAATTCTCAGATTTTTGATGCATCCTC 232
Query 253 ATATCATCCGTCAGTACGAAGGTATAGAGACGCCTGATAACATTTATGTTGTGATGGAAT 312
||||||||||||| || |||| |||||||||||| || |||||||||||||||||||||
Sbjct 233 ATATCATCCGTCAATATGAAGTTATAGAGACGCCAAATGACATTTATGTTGTGATGGAAT 292
Query 313 ATGTTAAGTCTAGAGAATTATTTGACTATATTGTA-AGAAACGGTAGATTACAAGAAGAC 371
||||||||||| ||||| ||||||||||||||||| ||||| |||| |||||| ||||||
Sbjct 293 ATGTTAAGTCTGGAGAACTATTTGACTATATTGTAGAGAAA-GGTAAATTACAGGAAGAC 351
Query 372 AAGGCTCGTCATCTTTTTCAACAGCTCATATCTGGTGTGGAGTATTGTCATCACAATA-G 430
||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||| |
Sbjct 352 GAGGCTCGTCATCTTTTTCAGCAGATCATATCTGGTGTAGAGTATTGTCATCGCAATATG 411
Query 431 AATCGTTCATAGAGATCTTAAGCCAGAGAATGTACTTTTGGATTCAAAATGCAACATAAA 490
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 412 -ATCGTTCATAGAGATCTTAAGCCCGAGAATGTGCTTTTGGATTCGCAATGCAACATAAA 470
Query 491 AATTGTTGACTTTGGATTGGGTAATGTCATGCAAGATGGTCACTTCTTTAAA-ACAAGTT 549
|||||||||||||||||| ||||||||||||| |||||||| || |||||| || ||||
Sbjct 471 GATTGTTGACTTTGGATTGAGTAATGTCATGCATGATGGTCA-TTTTTTAAAGACTAGTT 529
Query 550 GTGGAAGCCCTAATTATGCTGCTCCCGAGGTTGTTTCAGGAAAAC-ATTATTCTGGACCA 608
||||||||||||||||||||||||| |||||| |||||||||||| || || ||||||
Sbjct 530 GTGGAAGCCCTAATTATGCTGCTCCAGAGGTTATTTCAGGAAAACCAT-AT---GGACCA 585
Query 609 GAAGTAGATATATGGAGTTGCGGAGTGATATTGTATGCTCTCTTATGTGGTACTCTTCCT 668
|| ||||||||||||||||| || |||||||| |||||||| || |||||||||||||||
Sbjct 586 GATGTAGATATATGGAGTTGTGGGGTGATATTATATGCTCTGTTGTGTGGTACTCTTCCT 645
Query 669 TTC-AGCGACGAAAATATACCTAGTCTATTCGATAAAATAAAGAGAGGAATATATATTCT 727
||| | ||||||||||| |||| | ||||||| ||||||||||||||||| |||| |||
Sbjct 646 TTCGAT-GACGAAAATATTCCTAATGTATTCGAGAAAATAAAGAGAGGAATGTATACTCT 704
Query 728 TCCAGATCATTTATCACCTCTTGCTAGAGATTTGATACCAAGGATACTAATGGTGGATCC 787
|||| |||||||||||| | ||||||||||||||||||| || || || ||||| |||||
Sbjct 705 TCCAAATCATTTATCACATTTTGCTAGAGATTTGATACCGAGAATGCTTATGGTTGATCC 764
Query 788 T-CTAATGAGAATTAGCATTGCTGAGATTCGTCATCATCTTTGGTTCAATAATGATCTTC 846
| ||| |||||||||||||| ||||||||||||| |||| ||||||||||||| ||||||
Sbjct 765 TACTA-TGAGAATTAGCATTACTGAGATTCGTCAACATCCTTGGTTCAATAATCATCTTC 823
Query 847 CTCCTTATCTTACTATTCATCCATTAGATACTATAGAACAAGCTAAAAAG 896
||| ||||||| |||||| |||||||||||| ||||| ||||||||||||
Sbjct 824 CTCTTTATCTTTCTATTCCTCCATTAGATACCATAGACCAAGCTAAAAAG 873
Score = 257 bits (139), Expect = 2e-67
Identities = 361/462 (78%), Gaps = 39/462 (8%)
Strand=Plus/Plus
Query 1023 GATGGTATATTTAATTCGATAC-TT-CCAATTGATCAAGAGATTGCTTCAAATGTTGGAC 1080
|||||||||||||||||| || || || | | |||| | ||| ||||| ||||||| |
Sbjct 1054 GATGGTATATTTAATTCG--ACGTTACC-A--GTTCAAAATATTACTTCACATGTTGGCC 1108
Query 1081 ATTCGTTTCCTGCATTG-ACTGGACTAAGATCACAAT-TCCAAGATAATAGAAGTTGGAC 1138
|||| ||| | |||||| | |||||||| ||| |||| || ||||| | | || |||||
Sbjct 1109 ATTCATTTTCGGCATTGTA-TGGACTAAAATC-CAATGTCAAAGATGACAAAACATGGAC 1166
Query 1139 CCTTGGACTTCAGTCTCAAGGGAGTCCTCGTGAAATCATGAGTGAGGTTTTTAAGGCTCT 1198
|||||||||||||||||||||||||||| ||| ||||||| ||| ||||||| |||||
Sbjct 1167 CCTTGGACTTCAGTCTCAAGGGAGTCCTTATGATATCATGACTGAAATTTTTAAAGCTCT 1226
Query 1199 TCAAAGTCTAAAAATATGCTGGAAAAAGATTGGACTCTACAATATAAAATGCAAATGGGT 1258
||||| ||||||||||||||||||||| || |||||||||||||||||||| | ||||||
Sbjct 1227 TCAAAATCTAAAAATATGCTGGAAAAAAATCGGACTCTACAATATAAAATGTAGATGGGT 1286
Query 1259 TCGAAGCTTTGCAAACTACAAGAATCA-A-AATCAAAAGGAT-AATGTCCTCAAAGATGA 1315
||||||||||| |||| |||||||| | ||| | |||| ||||| | || | |
Sbjct 1287 CCGAAGCTTTGCTTACTATAAGAATCATACAATTGA--GGATGAATGTGC-CA----TCA 1339
Query 1316 ATCTAACATGATTGAGGATGAATGTTCTATGGTCTTACCAACTGTCATCAAATTTGAACT 1375
||| || || | || || || | | || | | || | | |||| | | |
Sbjct 1340 -TCTTACC-GACCGTC-ATCAAA-TT-T--GAAATT-C-AGCTAT-A-CAAAGT--A-CG 1385
Query 1376 TC-AGGGCAAGTACTTGCTGGACATCC-AGAGAGTTGATGGACATCAGTTTATCTTCTTA 1433
| | ||||| || ||||||||||||| | ||| ||||||||| |||||||||||||||
Sbjct 1386 -CGAAGGCAAATATTTGCTGGACATCCTA-AGAATTGATGGACCTCAGTTTATCTTCTTT 1443
Query 1434 GATCTATGTGCTGATTTTCTCACAGAGCTAGGTGTGCTCTAA 1475
|||||||||| || ||||||| |||||||||||| ||||||
Sbjct 1444 GATCTATGTGTTGCGTTTCTCAGAGAGCTAGGTGTCCTCTAA 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5