BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947885
Length=469
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54690.1 | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma ... 701 0.0
AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily... 243 2e-63
> AT1G54690.1 | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma
histone variant H2AX | chr1:20414316-20415287 REVERSE LENGTH=801
Length=801
Score = 701 bits (379), Expect = 0.0
Identities = 432/458 (94%), Gaps = 1/458 (0%)
Strand=Plus/Plus
Query 1 AATTTTCCGATAAATAAAAGATGAGTTCCGGCGCCGGCAGTGGAACAACCAAAGGAGGCA 60
||||| |||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 62 AATTTCCCGATAAACAAAAAATGAGTTCCGGCGCCGGCAGTGGAACAACTAAAGGTGGCA 121
Query 61 GAGGAAAGCCGAAAGCTACAAAGTCCGTTTCTCGATCGTCTAAAGCTGGTCTTCAGTTTC 120
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 122 GAGGAAAGCCAAAAGCTACAAAGTCCGTCTCTCGATCTTCTAAAGCTGGTCTTCAATTTC 181
Query 121 CCGTTGGAAGAATCGCTAGATTCCTTAAAGCCGGAAAATACGCTGAACGTGTTGGTGCCG 180
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 182 CCGTTGGAAGAATCGCTAGATTCCTTAAAGCCGGTAAATACGCCGAACGTGTTGGTGCCG 241
Query 181 GTGCTCCGGTTTATCTCTCCGCCGTTCTTGAGTACCTCGCCGCTGAGCTATTGGAGCTTG 240
||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||| |
Sbjct 242 GTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAGCTAG 301
Query 241 CTGGAAATGCGGCAAGAGATAACAAGAAGACACGTATCGTACCACGACACATTCAGCTTG 300
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 302 CTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATCGTACCACGGCACATTCAGCTTG 361
Query 301 CAGTGAGAAACGATGAAGAGCTTAGTAAACTTCTTGGAAGTGTAACAATCGCTAATGGAG 360
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 362 CAGTGAGGAACGATGAAGAGCTTAGTAAACTTCTTGGAAGTGTAACAATTGCTAATGGAG 421
Query 361 GAGTTTTGCCTAACATTCATCAGACACTTCTCCCATCAAAGGTTGGGAAGAACAAAGGCG 420
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 422 GAGTTTTGCCCAACATTCATCAGACTCTTCTCCCATCAAAGGTTGGAAAGAACAAAGGCG 481
Query 421 ATATCGGATCCGCTTCTCAAGAGTTTTGATTCTTATTT 458
|||||||||| |||||||||||||||| ||| ||||||
Sbjct 482 ATATCGGATCTGCTTCTCAAGAGTTTTAATT-TTATTT 518
> AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily
protein | chr5:22196477-22197492 FORWARD LENGTH=669
Length=669
Score = 243 bits (131), Expect = 2e-63
Identities = 232/280 (83%), Gaps = 10/280 (4%)
Strand=Plus/Plus
Query 102 AAAGCTGGTCTTCAGTTTCCC-GTTGGAAGAATCGCTAGATTCCTT-AAAGCCGGAAAAT 159
||||| |||||||| ||||| || || | |||||| | || ||| |||||||| ||||
Sbjct 127 AAAGCCGGTCTTCA-ATTCCCGGTGGGTCGTATCGCTCG-TTTCTTAAAAGCCGGTAAAT 184
Query 160 ACGCTGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCTCCGCCGTTCTTGAGTACCTCG 219
|||| ||||||||||||||||||||||||||||||||| |||||||||| || || | |
Sbjct 185 ACGCCGAACGTGTTGGTGCCGGTGCTCCGGTTTATCTCGCCGCCGTTCTCGAATATTTGG 244
Query 220 CCGCTGAGCTA-TTGGAGCTT-GCTGGAAATGCGGCAAGAGATAACAAGAAGACACGTAT 277
|||| ||| | ||| | || |||||||| || |||||||| |||||||||||||||||
Sbjct 245 CCGCCGAGGTTCTTGAA--TTAGCTGGAAACGCAGCAAGAGACAACAAGAAGACACGTAT 302
Query 278 CGTACCACGACACATTCAGCTTGCAGTGAGAAACGATGAAGAGCTTAGTAAACTTCTTGG 337
|| || || |||||||||||||| || ||||||||||| ||||| || || ||||||||
Sbjct 303 TGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAGCTAAGCAAGCTTCTTGG 362
Query 338 A-AGTGTAACAATCGCTAATGGAGGAGTTTTGCCTAACAT 376
| | ||| || || |||||||||||||| ||||||||||
Sbjct 363 AGA-TGTGACGATTGCTAATGGAGGAGTGATGCCTAACAT 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22303961268
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5