BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947904
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39320.1 | Symbols: | UDP-glucose 6-dehydrogenase family pr... 2390 0.0
AT3G29360.1 | Symbols: | UDP-glucose 6-dehydrogenase family pr... 1434 0.0
> AT5G39320.1 | Symbols: | UDP-glucose 6-dehydrogenase family
protein | chr5:15742762-15744943 FORWARD LENGTH=1792
Length=1792
Score = 2390 bits (1294), Expect = 0.0
Identities = 1420/1481 (96%), Gaps = 8/1481 (1%)
Strand=Plus/Plus
Query 8 TTTGCAGAGAAA-AAATATGGTGAAGATCTGTTGTATTGGAGCTGGATATGTAGGTGGAC 66
||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 89 TTT-CAG-GAAACAAA-ATGGTGAAGATCTGTTGTATTGGAGCTGGATATGTAGGAGGAC 145
Query 67 CAACAATGGCAGTGATTGCATTGAAATGTCCAGATATTGAAGTAGCAGTTGTTGATATCT 126
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 146 CAACAATGGCAGTGATTGCATTGAAATGTCCAGATATTGAAGTGGCAGTTGTTGATATCT 205
Query 127 CTGTTCCTAGGATCGAGGCTTGGAATAGTGATCAGCTTCCGATTTACGAGCCAGGACTTG 186
|||||||||| ||| | |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 206 CTGTTCCTAGAATCAACGCTTGGAACAGTGATCAGCTTCCGATTTACGAGCCAGGTCTTG 265
Query 187 ACGATATTGTTAAGCAATGTAGAGGGAAGAACCTTTTCTTTAGTACTGATGTGGAGAAAC 246
||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||
Sbjct 266 ACGATATCGTTAAGCAATGCAGAGGAAAGAATCTTTTCTTCAGTACTGATGTGGAGAAAC 325
Query 247 ATGTTAGAGAAGCTGATATCGTTTTTGTCTCTGTTAATACACCGACTAAAACGACTGGTC 306
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 326 ATGTTAGAGAAGCTGATATTGTCTTTGTCTCTGTTAACACACCGACTAAAACGACTGGTC 385
Query 307 TTGGAGCTGGGAAAGCTGCGGATCTCACTTATTGGGAGAGTGCTGCTCGTATGATCGCGG 366
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 386 TTGGAGCTGGGAAAGCTGCTGATCTCACTTATTGGGAGAGTGCTGCTCGTATGATCGCGG 445
Query 367 ATGTATCGGTTTCTGATAAGATTGTTGTTGAGAAATCGACTGTACCGGTCAAGACAGCTG 426
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 446 ATGTATCGGTTTCTGACAAGATTGTTGTTGAGAAATCGACTGTTCCGGTGAAGACAGCTG 505
Query 427 AAGCTATTGAGAAGATTTTGATGCATAATAGTAAAGGGATCAAGTTTCAGATTCTTTCGA 486
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 506 AAGCTATTGAGAAGATTTTGATGCATAACAGTAAAGGAATCAAGTTTCAGATTCTTTCGA 565
Query 487 ATCCGGAGTTTCTTGCAGAAGGAACTGCGATCGCTGATCTTTTTAACCCTGACCGTGTCT 546
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 566 ATCCGGAGTTTCTTGCTGAAGGAACTGCTATCGCTGATCTTTTTAACCCTGACCGTGTTT 625
Query 547 TGATCGGAGGGCGAGAAACACCAGAAGGATTCAAAGCTGTTCAGACACTTAAGGAGGTTT 606
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 626 TGATCGGAGGGCGAGAAACACCTGAAGGATTCAAAGCTGTTCAGACACTTAAAGAGGTTT 685
Query 607 ATGCTAATTGGGTTCCTGAAGACCAAATCATCACAACAAATCTCTGGTCTGCGGAGCTTT 666
||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||
Sbjct 686 ATGCTAATTGGGTTCCTGAAGGTCAGATCATCACAACTAATCTCTGGTCTGCTGAGCTTT 745
Query 667 CTAAGTTAGCTGCAAATGCTTTCTTGGCTCAGAGGATTTCATCAGTCAATGCCATGTCTG 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 CTAAGTTAGCTGCAAATGCTTTCTTGGCTCAGAGGATTTCATCAGTCAATGCCATGTCTG 805
Query 727 CTCTCTGTGAATCCACCGGTGCTGATGTTACTCAAGTTTCTTACGCTGTTGGTACTGATT 786
| || ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 806 CACTTTGTGAATCCACTGGTGCTGATGTTACTCAAGTGTCTTACGCTGTTGGTACTGATT 865
Query 787 CAAGAATCGGTTCCAAATTCTTGAATGCTAGTGTTGGATTCGGCGGTTCTTGTTTCCAGA 846
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 866 CAAGAATCGGTTCCAAATTCTTGAACGCTAGTGTTGGATTCGGAGGTTCTTGTTTCCAGA 925
Query 847 AGGACATTCTGAATCTCGTCTACATCTGTCAATGCAACGGACTTCCAGAAGTGGCGGAAT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 AGGACATTCTGAATCTCGTCTACATCTGTCAATGCAACGGACTTCCAGAAGTGGCGGAAT 985
Query 907 ACTGGAAACAAGTGATCAAGATCAACGATTACCAAAAGAACAGGTTTGTGAACAGAATCG 966
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 986 ACTGGAAACAAGTGATCAAGATCAACGATTACCAAAAGAACCGGTTCGTGAACAGAATCG 1045
Query 967 TCTCCTCTATGTTCAACACTGTCTCCAACAAGAAGGTTGCGATCCTCGGATTCGCATTCA 1026
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1046 TGTCCTCTATGTTCAACACTGTCTCCAACAAGAAGGTTGCGATTCTTGGATTCGCATTCA 1105
Query 1027 AGAAAGACACAGGTGACACAAGGGAAACACCTGCCATTGATGTGTGTAAAGGTCTGTTAG 1086
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1106 AGAAAGACACTGGTGACACAAGGGAAACACCTGCCATTGATGTGTGTAAAGGTCTATTAG 1165
Query 1087 GAGACAAAGCGCTA-ATCAGTATCTATGATCCTCAAGTCACAGAGGAACAGATT-ATGAG 1144
|||||||||| | | ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1166 GAGACAAAGCAC-AGATCAGTATCTATGATCCTCAAGTCACAGAGGAACAGATTCA-GAG 1223
Query 1145 AGATCTCTCGATGAAAAAGTTTGACTGGGACCATCCCCTTCACTTGCAGCCAATGAGTCC 1204
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1224 AGATCTCTCGATGAAAAAGTTCGACTGGGACCATCCTCTTCACTTGCAGCCAATGAGTCC 1283
Query 1205 AACCACAGTGAAACAAGTGAGTGTGACTTGGGACGCATATGCAGCTACAAAAGACGCACA 1264
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1284 AACCACAGTGAAACAAGTGAGTGTGACTTGGGACGCATATGAAGCTACAAAAGACGCACA 1343
Query 1265 CGCGGTTTGCATTTTGACTGAGTGGGACGAGTTTAAGTCGTTAGATTACCAGAAGATCTT 1324
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 CGCGGTTTGCGTTTTGACTGAGTGGGACGAGTTTAAGTCGTTAGATTACCAGAAGATCTT 1403
Query 1325 CGACAACATGCAGAAACCGGCTTTTATCTTCGACGGAAGAAACATTATGAATGTTAACAA 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 CGACAACATGCAGAAACCGGCTTTTATCTTCGACGGAAGAAACATTATGAATGTTAACAA 1463
Query 1385 GTTAAGAGAGATTGGTTTCATCGTTTACTCCATTGGTAAGCCACTCGACCCATGGCTCAA 1444
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1464 GTTAAGAGAGATTGGTTTCATTGTTTACTCCATTGGTAAGCCACTTGACCCATGGCTCAA 1523
Query 1445 GGACATGCCTGCCTTTGTCTAATCAGAAGGCAAAAACTGGT 1485
||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1524 GGACATGCCTGCCTTTGTCTAATCACAAGGCAAAACCTGGT 1564
> AT3G29360.1 | Symbols: | UDP-glucose 6-dehydrogenase family
protein | chr3:11267091-11269229 REVERSE LENGTH=1794
Length=1794
Score = 1434 bits (776), Expect = 0.0
Identities = 1240/1464 (85%), Gaps = 32/1464 (2%)
Strand=Plus/Plus
Query 20 AAATATGGTGAAGATCTGTTGTATTGGAGCTGGATATGTAGGTGGACCAACAATGGCAGT 79
||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 64 AAAGATGGTGAAGATATGTTGTATTGGAGCTGGGTATGTTGGTGGACCAACAATGGCAGT 123
Query 80 GATTGCATTGAAATGTCCAGATATTGAAGTAGCAGTTGTTGATATCTCTGTTCCTAGG-A 138
||||||||||||||||||||| |||||||||| ||||||||||||||||| || | | |
Sbjct 124 GATTGCATTGAAATGTCCAGACGTTGAAGTAGCGGTTGTTGATATCTCTGTACC-ACGTA 182
Query 139 TCGAGGCTTGGAATAGTGATCA-GCTTCCGATTTACGAGCCAGGACTTGACGATATTGTT 197
|| | |||||||| ||||| || |||||||||||||||||| || ||||| ||| ||||
Sbjct 183 TCAACGCTTGGAACAGTGA-CACGCTTCCGATTTACGAGCCTGGTCTTGATGATGTTGTG 241
Query 198 AAGCAATGTAGAGGGAAGAACCTTTTCTTTAGTACTGATGTGGAGAAACATGTTAGAGAA 257
|||||||| | || |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 242 AAGCAATGCCGTGGCAAGAACCTTTTCTTTAGTACTGATGTTGAGAAACATGTTAGGGAA 301
Query 258 GCTGATATCGTTTTTGTCTCTGTTAATACACCGACTAAAACGACTGGTCTTGGAGCTGGG 317
|||||||| || ||||| ||||| || ||||||||||| || | |||||||| |||||
Sbjct 302 GCTGATATTGTGTTTGTTTCTGTCAACACACCGACTAAGACTAGAGGTCTTGGTGCTGGT 361
Query 318 AAAGCTGCGGATCTCACTTATTGGGAGAGTGCTGCTCGTATGATCGCGGATGTATCGGTT 377
|||||||||||||| || || |||||||| ||||| ||||||||||| ||||| |||||
Sbjct 362 AAAGCTGCGGATCTTACGTACTGGGAGAGCGCTGCGCGTATGATCGCTGATGTTTCGGTA 421
Query 378 TCTGATAAGATTGTTGTTGAGAAATCGACTGTACCGGTCAAGACAGCTGAAGCTATTGAG 437
|| ||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 422 TCGGATAAGATTGTCGTTGAGAAATCGACTGTTCCGGTTAAAACAGCTGAAGCTATTGAG 481
Query 438 AAGATTTTGATGCATAATAGTAAAGGGATCAAGTTTCAGATTCTTTCGAATCCGGAGTTT 497
|||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 482 AAGATTTTGACACATAACAGTAAAGGGATTAAGTTTCAGATTCTTTCGAATCCCGAGTTT 541
Query 498 CTTG-CAGAAGGAACTGCGATCGCTGATCTTTTTAACCCTGACCGTGT-CTTGATCGGAG 555
||| | |||||||| ||||| || || ||||| || |||||||| ||| |||||||
Sbjct 542 -TTGGCGGAAGGAACCGCGATTAAGGACCTATTTAATCCGGACCGTGTTCTT-ATCGGAG 599
Query 556 GGCGAGAAACACCAGAAGGATTCAAAGCTGTTCAGACACTTAAGGAGGTTTATGCTA-AT 614
|||| ||||| |||||||| || ||||| || ||||| || ||| | || ||||| | |
Sbjct 600 GGCGGGAAACCCCAGAAGGGTTTAAAGCGGTGCAGACTCTCAAGAATGTGTATGC-ACAC 658
Query 615 TGGGTTCCTGAAGACCAAATCATCACAACAAATCTCTGGTCTGCGGAGCTTTCTAAG-TT 673
||||||||||||| ||||||||| ||||| |||||||||||||| ||||| || ||| ||
Sbjct 659 TGGGTTCCTGAAGGCCAAATCATAACAACCAATCTCTGGTCTGCTGAGCTGTCCAAGCTT 718
Query 674 AGCTGCAAATGCTTTCTTGGCTCAGAGGATTTCATCAGTCAATGCCATGTCTGCTCTCTG 733
|| ||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||
Sbjct 719 -GCGGCAAACGCTTTCTTGGCTCAAAGGATTTCATCAGTGAATGCTATGTCGGCTCTGTG 777
Query 734 TGAATCCACCGGTGCTGATGTTACTCAAGTTTCTTACGCTGTTGGTACTGATTCAAGAAT 793
|||| |||| || || ||||| || ||||| |||||||| |||||||| || ||||| ||
Sbjct 778 TGAAGCCACAGGCGCAGATGTCACGCAAGTGTCTTACGCGGTTGGTACAGACTCAAGGAT 837
Query 794 CGGTTCCAAATTCTTGAA-TGCTAGTGTTGGATTCGGCGGTTCTTGTTTCCAGAAGGACA 852
||| |||| |||||||| | | |||||||||||||| ||||| ||||||||||||||||
Sbjct 838 TGGTCCCAAGTTCTTGAACT-CGAGTGTTGGATTCGGTGGTTCGTGTTTCCAGAAGGACA 896
Query 853 TTCTGAATCTCGTCTACATCTGTCAATGCAACGGACTTCCAGAAGTGGCGGAATACTGGA 912
|||||||||| |||||||||||| | ||||||||||| || |||||||| || |||||||
Sbjct 897 TTCTGAATCTTGTCTACATCTGTGAGTGCAACGGACTCCCGGAAGTGGCAGAGTACTGGA 956
Query 913 AACAAGTGATCAAGATCAACGATTACCAAAAGAACAGGTTTGTGAACAGAATCGTCTCCT 972
| ||||| ||||||||||| || ||||| |||| | |||| |||||| | | || ||||
Sbjct 957 AGCAAGTCATCAAGATCAATGACTACCAGAAGAGCCGGTTCGTGAACCGTGTTGTTTCCT 1016
Query 973 CTATGTTCAACACTGTCTCCAACAAGAAGGTTGCGATCCTCGGATTCGCATTCAAGAAAG 1032
| ||||||||| |||| || ||||||||| ||||| | ||||| ||||||||||||||||
Sbjct 1017 CCATGTTCAACTCTGTATCAAACAAGAAGATTGCGGTTCTCGGTTTCGCATTCAAGAAAG 1076
Query 1033 ACACAGGTGACACAAGGGAAACACCTGCCATTGATGTGTGTAAAGGTCTGTTAGGAGACA 1092
|||| |||||||||||||| || || ||||| |||||||| || ||||| |||| |||||
Sbjct 1077 ACACCGGTGACACAAGGGAGACTCCAGCCATCGATGTGTGCAAGGGTCTTTTAGAAGACA 1136
Query 1093 AAGC--G-CTAATCAGTATCTATGATCCTCAAGTCACAGAGGAACAGATT-ATGAGAGAT 1148
|||| | |||| || | | || || || ||||| || ||||| ||||| | ||| |||
Sbjct 1137 AAGCAAGGCTAAGCA-T-T-TACGACCCACAAGTGACTGAGGATCAGATCCA-GAGGGAT 1192
Query 1149 CTCTCGATGAAAAAGTTTGACTGGGACCATCCCCTTCACTTGCAGCCAATGAGTCCAACC 1208
| || ||||| ||||| |||||||||||||| || || |||||||||||||| |||||
Sbjct 1193 TTATCCATGAACAAGTTCGACTGGGACCATCCTCTACATTTGCAGCCAATGAGCCCAACA 1252
Query 1209 ACAGTGAAACAAGTGAGTGTGACTTGGGACGCATATGCAGCTACAAAAGACGCACACGCG 1268
|||||||||||||||| || |||||||||||||| | ||| || || ||||| |||| |
Sbjct 1253 ACAGTGAAACAAGTGACCGTTACTTGGGACGCATACGAAGCAACTAAGGACGCTCACG-G 1311
Query 1269 GT-T-TGCATTTTGACTGAGTGGGACGAGTTTAAGT-CGTTAGATTACCAGAAGATCTTC 1325
| | ||||| |||| |||||||| ||||| ||| | || |||| ||||||||||||
Sbjct 1312 -TATCTGCATCATGACCGAGTGGGATGAGTTCAAGAACCTT-GATTTCCAGAAGATCTTT 1369
Query 1326 GACAACATGCAGAAACCGGCTTTTATCTTCGACGGAAGAAACATTATGAATGTT-AACAA 1384
||||||||||||||||| ||||| | ||||| |||||||||||||||||| | || ||
Sbjct 1370 GACAACATGCAGAAACCAGCTTTCGTGTTCGATGGAAGAAACATTATGAATCTGCAA-AA 1428
Query 1385 GTTAAGAGAGATTGGTTTCATCGTTTACTCCATTGGTAAGCCACTCGACC-CATGGCTCA 1443
| |||| |||||||||||||| |||||||||||||||||||| |||||| | |||||||
Sbjct 1429 GCTAAGGGAGATTGGTTTCATTGTTTACTCCATTGGTAAGCCTCTCGACGAC-TGGCTCA 1487
Query 1444 AGGACATGCCTGCCTTTGTCTAAT 1467
|||||||||||||| ||| |||||
Sbjct 1488 AGGACATGCCTGCCGTTGCCTAAT 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73342996245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5