BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947908

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G39260.1 | Symbols: ATEXPA21, EXP21, ATEXP21, ATHEXP ALPHA 1...   115    2e-25


> AT5G39260.1 | Symbols: ATEXPA21, EXP21, ATEXP21, ATHEXP ALPHA 
1.20, EXPA21 | expansin A21 | chr5:15726378-15727458 REVERSE 
LENGTH=932
Length=932

 Score =  115 bits (62),  Expect = 2e-25
 Identities = 89/102 (87%), Gaps = 2/102 (2%)
 Strand=Plus/Plus

Query  147  GCATTGAGCACGGCGCTCTTCAACAACGGGTACACATGTGGGGCTTGTTACGAGATCATG  206
            ||||||||||||||||||||||||| ||||  | ||||||||||||||||||||||||||
Sbjct  289  GCATTGAGCACGGCGCTCTTCAACAGCGGGGCCTCATGTGGGGCTTGTTACGAGATCATG  348

Query  207  TG-TGCACGTGATCCACACTGATGTTTGCCCGGATCCATCAA  247
            || | | | | |||||||  |||||||| ||||||| |||||
Sbjct  349  TGCT-CTCCTAATCCACAAGGATGTTTGTCCGGATCTATCAA  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11209708027


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5