BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947909

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G39280.1 | Symbols: ATEXPA23, ATEXP23, ATHEXP ALPHA  1.17, E...   207    4e-53
  AT5G39300.1 | Symbols: ATEXPA25, EXP25, ATEXP25, ATHEXP ALPHA 1...   202    2e-51
  AT5G39260.1 | Symbols: ATEXPA21, EXP21, ATEXP21, ATHEXP ALPHA 1...   187    5e-47


> AT5G39280.1 | Symbols: ATEXPA23, ATEXP23, ATHEXP ALPHA  1.17, 
EXPA23 | expansin A23 | chr5:15730713-15731706 REVERSE LENGTH=780
Length=780

 Score =  207 bits (112),  Expect = 4e-53
 Identities = 193/230 (84%), Gaps = 14/230 (6%)
 Strand=Plus/Plus

Query  76   GAGGAGCCGGAGATATTAAAG-CCATGC-AGATTAAGGGAAG-CAGGACTGGGTGGATAA  132
            ||||||| ||||||| | |||   |||| || |||| || || || ||| ||||||||||
Sbjct  557  GAGGAGCTGGAGATA-TCAAGTTGATGCAAG-TTAAAGG-AGACAAGACCGGGTGGATAA  613

Query  133  CAATG-ATCAAGAATTGGGGACAAAACTGGACCACTGGTATT-TTGTTGACCGATCAGGG  190
            ||||| |  ||||| |||||||||||||||||||||||| ||  | ||||| | ||||||
Sbjct  614  CAATGCA-AAAGAACTGGGGACAAAACTGGACCACTGGTGTTAAT-TTGACTGGTCAGGG  671

Query  191  T-TTATTATTTAGGGTTATGACGAGTGATGGGATTACAAAGGATTTTACTTATGTGATTC  249
            | || | ||| ||||||| ||||||||||||| ||||||| ||||||| | ||||||| |
Sbjct  672  TATT-TCATTCAGGGTTACGACGAGTGATGGGGTTACAAAAGATTTTAATAATGTGATGC  730

Query  250  C-ACCAAATTGGGGATTTGGCCAGACTTTTGATGGAAAGATTAACTTTTA  298
            | | | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct  731  CAAAC-AATTGGGGATTTGGACAGACTTTTGATGGAAAGATTAACTTTTA  779


> AT5G39300.1 | Symbols: ATEXPA25, EXP25, ATEXP25, ATHEXP ALPHA 
1.18, EXPA25 | expansin A25 | chr5:15737427-15738387 REVERSE 
LENGTH=783
Length=783

 Score =  202 bits (109),  Expect = 2e-51
 Identities = 192/230 (83%), Gaps = 14/230 (6%)
 Strand=Plus/Plus

Query  76   GAGGAGCCGGAGATATTAAAG-CCATGC-AGATTAAGGGAAG-CAGGACTGGGTGGATAA  132
            |||| || ||||||| | |||   |||| || |||| || || || ||| ||||||||||
Sbjct  560  GAGGCGCTGGAGATA-TCAAGTTGATGCAAG-TTAAAGG-AGACAAGACCGGGTGGATAA  616

Query  133  CAATG-ATCAAGAATTGGGGACAAAACTGGACCACTGGTATT-TTGTTGACCGATCAGGG  190
            ||||| |  ||||| |||||||||||||||||||||||| ||  | ||||| | ||||||
Sbjct  617  CAATGCA-AAAGAACTGGGGACAAAACTGGACCACTGGTGTTAAT-TTGACTGGTCAGGG  674

Query  191  T-TTATTATTTAGGGTTATGACGAGTGATGGGATTACAAAGGATTTTACTTATGTGATTC  249
            | || | ||| ||||||| ||||||||||||| ||||||| ||||||| | ||||||| |
Sbjct  675  TATT-TCATTCAGGGTTACGACGAGTGATGGGGTTACAAAAGATTTTAATAATGTGATGC  733

Query  250  C-ACCAAATTGGGGATTTGGCCAGACTTTTGATGGAAAGATTAACTTTTA  298
            | | | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct  734  CAAAC-AATTGGGGATTTGGACAGACTTTTGATGGAAAGATTAACTTTTA  782


> AT5G39260.1 | Symbols: ATEXPA21, EXP21, ATEXP21, ATHEXP ALPHA 
1.20, EXPA21 | expansin A21 | chr5:15726378-15727458 REVERSE 
LENGTH=932
Length=932

 Score =  187 bits (101),  Expect = 5e-47
 Identities = 187/228 (82%), Gaps = 8/228 (4%)
 Strand=Plus/Plus

Query  76   GAGGAGCCGGAGATATTAAAGCCATG-CAGATTAAGGGAAGCAGGACTGGGTGGATAACA  134
            ||||||| |||||||||| |||| || | |  |||||||||||  || | |||| ||  |
Sbjct  608  GAGGAGCAGGAGATATTATAGCCGTGTCTG-CTAAGGGAAGCAAAACCGCGTGGGTAGTA  666

Query  135  ATGATCAAGA-ATTGGGGACAAAACTGGACCACTGGTAT-TTTGT-TGACCGATCAGGGT  191
            |||| | ||| ||||||||||||| ||||| |||   || ||  | | |||| |||  ||
Sbjct  667  ATGAGC-AGATATTGGGGACAAAATTGGACTACT--AATGTTAATCTAACCGGTCAAAGT  723

Query  192  TTATTATTTAGGGTTATGACGAGTGATGGGATTACAAAGGATTTTACTTATGTGATTCCA  251
             ||| ||| |||||||  |||||||||||||||||||||||||||||| ||||||| |||
Sbjct  724  GTATCATTAAGGGTTACAACGAGTGATGGGATTACAAAGGATTTTACTGATGTGATGCCA  783

Query  252  CCAAATTGGGGATTTGGCCAGACTTTTGATGGAAAGATTAACTTTTAA  299
             ||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct  784  GCAAGTTGGGGATTTGGGCAGACTTTTGATGGAAAGACTAACTTTTAA  831



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14828985955


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5