BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947912

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G39240.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   315    3e-85


> AT5G39240.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G29370.1); 
Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:15712683-15713003 
REVERSE LENGTH=321
Length=321

 Score =  315 bits (170),  Expect = 3e-85
 Identities = 286/337 (85%), Gaps = 27/337 (8%)
 Strand=Plus/Plus

Query  21   ATGAGAATCTT-AAAGACTCAAAGAT-CA-AGG-GGAGGAAGAAGAAGCAAGAAAATTGG  76
            ||||||||||| ||| |||||||||| || ||| ||| |||||| |||||||||| ||||
Sbjct  1    ATGAGAATCTTGAAA-ACTCAAAGATCCAGAGGAGGAAGAAGAACAAGCAAGAAATTTGG  59

Query  77   AAACAAAAGAACAAATGCTTCATCATGTGGCGGAGAAAAGTTCTCCGAGAAGCTTCAGGC  136
            ||||   ||||  ||     ||  | |||| |||||||||||||| ||||||||||||||
Sbjct  60   AAAC---AGAA-GAA-----CA--A-GTGGAGGAGAAAAGTTCTCGGAGAAGCTTCAGGC  107

Query  137  GCTTAAGAGTCTTCTTCCTCCG--G-C-AACGACGACGGAGCAGACTCGTCAAGATGCTT  192
            ||||||||||||||||||||||  | | || || ||||||||||| ||||||||||||||
Sbjct  108  GCTTAAGAGTCTTCTTCCTCCGCCGTCGAA-GATGACGGAGCAGAGTCGTCAAGATGCTT  166

Query  193  ACGTGGAGGAAGATTCCGGCAGT-GGACAGACAGAACAGTTGTTTCAAGAAACTGCTGAC  251
            ||||||| ||||||||| |  || ||| |||| ||||||||||||||||||||||| || 
Sbjct  167  ACGTGGAAGAAGATTCCAGT-GTTGGAGAGACGGAACAGTTGTTTCAAGAAACTGCGGAT  225

Query  252  TACATCGTCAGGCTTAGGACACAAGTCATGGTGTTGCAAAAGTTAATCAAGATCTATGGA  311
            ||||| ||||| ||||||  ||||||| |||||||||||||||||||| |||| ||||||
Sbjct  226  TACATTGTCAGACTTAGGGGACAAGTCGTGGTGTTGCAAAAGTTAATCGAGATTTATGGA  285

Query  312  TCATCTGATCA-AACGGAAGATAGTTT-GTGTCATAA  346
            ||||||||||| || |||||||| ||| || ||||||
Sbjct  286  TCATCTGATCAGAA-GGAAGATAATTTTGTTTCATAA  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18146657389


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5