BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947913 Length=380 Score E Sequences producing significant alignments: (Bits) Value AT5G39230.1 | Symbols: | TFIIB zinc-binding protein | chr5:157... 411 3e-114 > AT5G39230.1 | Symbols: | TFIIB zinc-binding protein | chr5:15709474-15709925 FORWARD LENGTH=360 Length=360 Score = 411 bits (222), Expect = 3e-114 Identities = 291/322 (90%), Gaps = 14/322 (4%) Strand=Plus/Plus Query 21 ATGGAGGTAATTACTTGCTTGGACTGCAAGAAACGAACCGATACGGTTATCGACTATCGA 80 ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 1 ATGGAGGTAATTACTTGCTTGGACTGCAAGAAACGAACCGATACGGTAATTGATTATCGA 60 Query 81 TCTGGGGATACAATCTGCACAGAATGTGGTTTAATCCTTGATTCCCACTATATTGTCGAC 140 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 TCTGGGGATACAATCTGCACAGAATGTGGTTTAATCCTCGATTCCCACTATATTGTCGAT 120 Query 141 TCTTTTGACCGAAATATCTCACATATGACTCCTCCTTCCATCAGGACCAAACACAAGTT- 199 ||||||||||||||||||||| ||||||||||| || |||||||||||||||||| | Sbjct 121 TCTTTTGACCGAAATATCTCATATATGACTCCTTCT---ATCAGGACCAAACACAAGGTC 177 Query 200 GGACACAAACGTTCTCA--A-GAACCCTAACCCTAAAGACAAAGCCTCCTACACAAGCTC 256 || |||||||||||||| | ||||||||||||||||||||||||||||| || ||||| Sbjct 178 GG-CACAAACGTTCTCATCAAGAACCCTAACCCTAAAGACAAAGCCTCCTCCATAAGCTT 236 Query 257 CAGGGTCTCATCACCATCTTGCTCCAGTCATAAAGCTCTGCTAGAAG--GC----CATCA 310 ||||||||||||||||||||||| ||||||| | ||||| ||||||| | ||||| Sbjct 237 CAGGGTCTCATCACCATCTTGCTGCAGTCATTATGCTCTTCTAGAAGTAGAAGTTCATCA 296 Query 311 CGCGAGGTTGATCGAGGAGCTA 332 | |||||||||||||||||||| Sbjct 297 CACGAGGTTGATCGAGGAGCTA 318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17895318644 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5