BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947913

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G39230.1 | Symbols:  | TFIIB zinc-binding protein | chr5:157...   411    3e-114


> AT5G39230.1 | Symbols:  | TFIIB zinc-binding protein | chr5:15709474-15709925 
FORWARD LENGTH=360
Length=360

 Score =  411 bits (222),  Expect = 3e-114
 Identities = 291/322 (90%), Gaps = 14/322 (4%)
 Strand=Plus/Plus

Query  21   ATGGAGGTAATTACTTGCTTGGACTGCAAGAAACGAACCGATACGGTTATCGACTATCGA  80
            ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct  1    ATGGAGGTAATTACTTGCTTGGACTGCAAGAAACGAACCGATACGGTAATTGATTATCGA  60

Query  81   TCTGGGGATACAATCTGCACAGAATGTGGTTTAATCCTTGATTCCCACTATATTGTCGAC  140
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct  61   TCTGGGGATACAATCTGCACAGAATGTGGTTTAATCCTCGATTCCCACTATATTGTCGAT  120

Query  141  TCTTTTGACCGAAATATCTCACATATGACTCCTCCTTCCATCAGGACCAAACACAAGTT-  199
            ||||||||||||||||||||| ||||||||||| ||   |||||||||||||||||| | 
Sbjct  121  TCTTTTGACCGAAATATCTCATATATGACTCCTTCT---ATCAGGACCAAACACAAGGTC  177

Query  200  GGACACAAACGTTCTCA--A-GAACCCTAACCCTAAAGACAAAGCCTCCTACACAAGCTC  256
            || ||||||||||||||  | ||||||||||||||||||||||||||||| || ||||| 
Sbjct  178  GG-CACAAACGTTCTCATCAAGAACCCTAACCCTAAAGACAAAGCCTCCTCCATAAGCTT  236

Query  257  CAGGGTCTCATCACCATCTTGCTCCAGTCATAAAGCTCTGCTAGAAG--GC----CATCA  310
            ||||||||||||||||||||||| ||||||| | ||||| |||||||  |     |||||
Sbjct  237  CAGGGTCTCATCACCATCTTGCTGCAGTCATTATGCTCTTCTAGAAGTAGAAGTTCATCA  296

Query  311  CGCGAGGTTGATCGAGGAGCTA  332
            | ||||||||||||||||||||
Sbjct  297  CACGAGGTTGATCGAGGAGCTA  318



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17895318644


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5