BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947914
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39220.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1644 0.0
> AT5G39220.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:15705816-15708228 FORWARD LENGTH=1279
Length=1279
Score = 1644 bits (890), Expect = 0.0
Identities = 981/1026 (96%), Gaps = 2/1026 (0%)
Strand=Plus/Plus
Query 12 AGAGAGAGAAATGATGGGTAGCTTGAAAATGGTCTTTCCACCACCTCCGGTGACAAGATT 71
|||||||||||||||||||||||||||||| | | |||||||||||||| |||||||||
Sbjct 88 AGAGAGAGAAATGATGGGTAGCTTGAAAATAATATCTCCACCACCTCCGGCGACAAGATT 147
Query 72 CCGGCAACGGGTAACGGCGAACGGAGATGGATTTCCGGCGTTTCTTCCGAAGGAGATACA 131
||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct 148 CCGGCAACGAGTAACGGCGAACGGAGATGGGTTTCCGACATTTCTTCCGAAGGAGATACA 207
Query 132 GAACATAAGAGACCCATTTGCAAGAGCTTTAGCTCAAAGGATTGTACGAATTCCTGTTCC 191
||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 208 AAACATAAAAGATCCATTCGCAAGAGCTTTAGCTCAAAGGATTGTACGAATTCCTGTTCC 267
Query 192 TCTTCAGATGGGAAACTTTAGTGGCAGTGTAATGAGTAGCTGCATCAAACCACTTGTTCA 251
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 268 TCTTCAGATGGGAAACTTTAGAGGCAGTGTAATGAGTAGCTGTATCAAACCACTTGTTCA 327
Query 252 ATTACATGACAAAAGTCCTGTTGTTCTTCTCCATTGTTTCGACAGTTCTTGTCTTGAATG 311
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 328 ATTACACGACAAAAGTCCCGTTGTTCTTCTCCATTGTTTCGACAGTTCTTGTCTTGAATG 387
Query 312 GAGACGGACTTATCCTCTGCTTGAACAAGCTTGTCTTGAGACTTGGGCTATTGATGTTCT 371
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 GAGACGTACTTATCCTCTGCTTGAACAAGCTTGTCTTGAGACTTGGGCTATTGATGTTCT 447
Query 372 TGGTTGGGGTTTCTCAGATCTTGAGAAACTTCCACCATGTGATGCAGCATCTAAGCGACA 431
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TGGTTGGGGATTCTCAGATCTTGAGAAACTTCCACCATGTGATGCAGCATCTAAGCGACA 507
Query 432 CCATCTATTCGAGCTTTGGAAAACATATATCAAACGACCAATGATCTTAGTTGGACCAAG 491
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 508 TCATTTATTCGAGCTTTGGAAAACATATATCAAACGACCAATGATTTTAGTTGGACCAAG 567
Query 492 CTTAGGAGCAACCGTAGCAGTTGATTTCACTGCTACATACCCCGAAGCTGTTGATAAATT 551
|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 568 CTTAGGAGCAACCGTAGCTGTTGATTTCACTGCTACTTACCCGGAAGCTGTTGATAAATT 627
Query 552 GGTTCTTATTAATGCCAATGCGTATTCTGAAGGAACCGGTCGGCTCAAAGAGTTACCAAA 611
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 628 GGTTCTTATTAATGCCAATGCGTATTCAGAAGGAACCGGTCGGCTTAAAGAGTTACCAAA 687
Query 612 ATCCATCGCTTACGCTGGGGTAAAGTTGTTAAAGTCATTCCCTCTACGCCTTTTGGCCAA 671
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 688 ATCCATCGCTTACGCTGGGGTTAAGTTGTTAAAGTCATTCCCTCTGCGCCTTTTGGCCAA 747
Query 672 CGTCTTAGCCTTTTGTTCCTCACCCTTATCCGAGAACATAGATTGGACTAATATTGGCCG 731
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 748 TGTCCTAGCCTTTTGTTCCTCGCCCTTATCCGAGAACATAGATTGGACTAATATTGGTCG 807
Query 732 GTTACATTGTCAAATGCCATGGTGGGAGGATGCTATGGTCGATTTTATGATTAGTGGAGG 791
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 808 GTTACATTGTCAAATGCCGTGGTGGGAGGATGCTATGGTCGATTTTATGATTAGCGGGGG 867
Query 792 CTATAACGTTGCGTCACACATCAAAC-TCATCGACCATAAGACGCTCGTTGTATGCAGTG 850
||||||||| |||||||||||||||| | || ||||||||||||||||| ||||||||||
Sbjct 868 CTATAACGTCGCGTCACACATCAAACAT-ATTGACCATAAGACGCTCGTGGTATGCAGTG 926
Query 851 AGAACGATCAGATTGTTAGCAACCAGCTCTCAGTTAAATTGTTGTGTGAGCTAGCAAATG 910
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 AGAACGATCAGATAGTTAGCAACCAGCTCTCAGTTAAATTGTTGTGTGAGCTAGCAAATG 986
Query 911 CGGTTTTGCGGGAAGTACCAGATTCCGGTCATCTTCCACATGTTGAGAACCCTAAACACA 970
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 987 CGGTTTTGCGGGAAGTACCAGATTCCGGTCATCTTCCACATGTTGAGAATCCTAAACACA 1046
Query 971 TTGTGAAGCTGATATCGGATTTCGCCAGTGGAAAGCTCTATTGATTCCATATACAGTAAA 1030
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1047 TTGTGAAGCTGATATCAGATTTCGCCAGTGGAAAGCTCTATTGATTCCATATACTGTAAA 1106
Query 1031 CTCTGC 1036
||||||
Sbjct 1107 CTCTGC 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5