BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947925
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39050.1 | Symbols: | HXXXD-type acyl-transferase family pr... 845 0.0
AT5G39080.1 | Symbols: | HXXXD-type acyl-transferase family pr... 776 0.0
AT5G39090.1 | Symbols: | HXXXD-type acyl-transferase family pr... 712 0.0
> AT5G39050.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:15634586-15636065 FORWARD LENGTH=1480
Length=1480
Score = 845 bits (457), Expect = 0.0
Identities = 708/827 (86%), Gaps = 26/827 (3%)
Strand=Plus/Plus
Query 16 AAGAAATGGTTTCATCACTTAACA-TCATCGACGTTGCACGAGTCACCCCTTCAAACTCT 74
||||||||| ||||||||||| | |||||||||| ||||||||||| || ||||||||
Sbjct 21 AAGAAATGGAGTCATCACTTAA-AGTCATCGACGTGGCACGAGTCACACCATCAAACTCC 79
Query 75 GAATCGACCGACTCACTCACTCTCCCACTAACCTTCTTCGACCTCCTCTGGTTCAAGA-T 133
|| ||| |||| ||||||||||||||||| |||||||||||||||||||||| ||| | |
Sbjct 80 GACTCGTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTCCTCTGGTACAA-ACT 138
Query 134 TCACGCCGTGGAACGAGTCATCTTCTACAGACTCAACGACGCAACTTGCT-CTTTCTTTG 192
||||||||| ||||||||||||||||||| ||||| |||||||| | | | |||||||||
Sbjct 139 TCACGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGCAAGTCG-TCCTTTCTTTG 197
Query 193 ACTCAGTCATCGTCCCCAATCTCAAAACCTCTCTCTCCTTATCCCTCTCTCACTATCTCC 252
|||||||||||||||| || |||||||| |||||||||| ||||||||||||||| ||||
Sbjct 198 ACTCAGTCATCGTCCCAAACCTCAAAACATCTCTCTCCTCATCCCTCTCTCACTACCTCC 257
Query 253 CACTCGCCGGAAAACTCGTCTGGAAACCATTTGAACCCAAACC-AAGCATTGTATACACC 311
||||||||||||||||||| ||| ||||| |||| |||||||| || || || ||||||
Sbjct 258 CACTCGCCGGAAAACTCGTGTGGGAACCACTTGATCCCAAACCGAA-AATCGTCTACACC 316
Query 312 CCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGATTTCTCCCGCTTAACC 371
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 317 CCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCAGACTTCTCACGTTTAACC 376
Query 372 GG-AATAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTACAAAACTC 430
|| || |||||| ||| || ||| |||||| |||| ||||||||||||||||| |||
Sbjct 377 GGCAA-AGAACCGTTCCCCACCACCGAGTTATACCCGTTAGTCCCCGAGTTACATGTCTC 435
Query 431 CGACGACTCGGCTTCCGTCATGTCATTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTG 490
||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 436 CGACGACTCAGCTTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTG 495
Query 491 CATCGGCGT-AACCGCACACCATGCCGTTTCT-GATGGGAAAACGACAACCA-CTTTTCT 547
|||| |||| || ||||| |||||||||| | ||||| ||||||||||||| |||| ||
Sbjct 496 CATCAGCGTTAAT-GCACATCATGCCGTTT-TAGATGGAAAAACGACAACCAACTTT-CT 552
Query 548 CAAATCTTGGGCTCACTTC-TGTAAACACCAAGATTCTTCTCTACCGGAGGATCTGATTC 606
|||||||||||| | | | |||||| |||||||||||| ||||||| ||||||| || |
Sbjct 553 CAAATCTTGGGCACGCA-CATGTAAAAACCAAGATTCTTTTCTACCGCAGGATCTAATCC 611
Query 607 C-GTTTTACGATCGTACGGTCATAAAAAATCCACCGAATAGT-GATATAAA-ACTTTTGA 663
| |||| |||||||||||||||||||| ||||| | || | |||| ||| | | || |
Sbjct 612 CAGTTT-ACGATCGTACGGTCATAAAAGATCCAATGGATT-TAGATACAAAGA-TCTTAA 668
Query 664 ACTCATGGCACTCTTTAGCCAAAATGTTCTCCGGCGGTAAAGAACCACAAAACCCCAAGA 723
|| | |||||| |||||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct 669 ACGCTTGGCACAGAGTAGCCAAAGTGTTCACCGGTGGTAAAGAACCAGAAAACCCCAAGA 728
Query 724 GTTTGAAGCTTCC-TCCATCGCCGGTGATTGATCCTGACGTCTTACGATACACTCTTGAG 782
|||| |||||| | ||||||| ||||| ||||||||| || ||||||||||| |
Sbjct 729 GTTTAAAGCTTTTATGG-TCGCCGGAGATTGGTCCTGACGTTTTCCGATACACTCTCAAT 787
Query 783 CTAACTCGCGAAGATATCCAAATGCTTCGAGAGAGACTCAAGAGAGA 829
|| ||| | ||||||||||||| |||||||||||||||||||| |||
Sbjct 788 CTCACTAGAGAAGATATCCAAAAGCTTCGAGAGAGACTCAAGAAAGA 834
> AT5G39080.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:15641658-15643161 FORWARD LENGTH=1504
Length=1504
Score = 776 bits (420), Expect = 0.0
Identities = 692/823 (84%), Gaps = 20/823 (2%)
Strand=Plus/Plus
Query 17 AGAAATGGTTTCATCACTTAACATCATCGACGTTGCACGAGTCACCCCTTCAAACTCTGA 76
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 20 AGAAATGGTTTCATCACTTAACATCATCGAAGTGGCACGAGTCACCCCTTCAAACTCTGA 79
Query 77 ATCGACCGACTCACTCACTCTCCCACTAACCTTCTT-CGACCTCCTCTGGT-TCAAGATT 134
||| |||| ||||||| ||||||||| || || || |||||| ||| | | || ||
Sbjct 80 CTCGGCCGAGTCACTCAGTCTCCCACTCAC-TTATTTCGACCTTATCTATTATAAAC-TT 137
Query 135 CACGCCGTGGAACGAGTCATCTTCTACAGACTCAACGACGCAACTTGCTCTTTCTTTGAC 194
| |||||| |||||||||||||||||| || ||| | ||| |||| || |||||||||||
Sbjct 138 CGCGCCGTCGAACGAGTCATCTTCTACCGAATCACCAACGTAACTCGCCCTTTCTTTGAC 197
Query 195 TCAGTCATCGTCCCCAATCTCAAAACCTCTCTCTCCTTATCCCTCTCTCACTATCTCCCA 254
|||||||||||||| ||||||||||||||||| |||| || |||||||||||||||||||
Sbjct 198 TCAGTCATCGTCCCAAATCTCAAAACCTCTCTATCCTCATGCCTCTCTCACTATCTCCCA 257
Query 255 CTCGCCGGAAAACTCGTCTGGAAACCATTTGAACCCAAACCAAGCATTGTATACACCCCA 314
||||| || ||||| | ||| ||||| |||| | |||||||| |||||| ||| ||| |
Sbjct 258 CTCGCTGGCAAACTTATATGGGAACCACTTGATCACAAACCAACCATTGTCTACTCCCAA 317
Query 315 AACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGATTTCTCCCGCTTAACCGG- 373
||||||| ||||||||||| ||||||||| ||||||| |||||||| | ||| ||||
Sbjct 318 AACGACGACGTTTCATTCAGCGTCGCCGAAACAAACGCTGATTTCTCTAGTTTATCCGGC 377
Query 374 AATAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTACAAAACTCCGA 433
||| ||||||||| |||||| ||||||| |||| |||||||||| |||||||| ||||||
Sbjct 378 AAT-GAACCATTCCCCTCCACCGAGTTGTACCCGTTAGTCCCCGCGTTACAAAGCTCCGA 436
Query 434 CGACTCGGCTTCCGTCATGTCATTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTGCAT 493
||||||||| ||| | |||| || |||||||||||||||||||||||||| ||||||||
Sbjct 437 CGACTCGGCCTCCATTGTGTCGTTCCAAGTCACGTTATTTCCAAACCAAGGATTTTGCAT 496
Query 494 CGGCGTAACCGCACACCATGCCGTTTCT-GATGGGAAAACGACAACCACT-TTTCTCAAA 551
|||||||| ||||| |||||||||| | ||||| ||||||||||||| | |||||||||
Sbjct 497 CGGCGTAAGTGCACATCATGCCGTTT-TAGATGGAAAAACGACAACCA-TGTTTCTCAAA 554
Query 552 TCTTGGGCTCACTTCTGTAAACACCAAGATTCTTCTCTACCGGAGGATCTGATTCCGTTT 611
|| ||||||||| | |||||||| ||||||| |||||||||| ||||| | || || |
Sbjct 555 TCCTGGGCTCACATATGTAAACATCAAGATTTTTCTCTACCGCAGGATTTAATCCCAACT 614
Query 612 TACGATCGTACGGTCATAAAAAATCCACCGAATAGTGATATA-AAACTTTTGAACTCA-T 669
||||||||||||||||| |||| |||| || ||||||| | | ||| ||||||| | | |
Sbjct 615 TACGATCGTACGGTCATTAAAAGTCCAACGGATAGTGAAA-ACAAAGTTTTGAA-TGAGT 672
Query 670 GGCACTCTTT-AGCCAAAATGTTCTCCGGCGGTAAAGAACCA-CAAAACCCCAAGAGTTT 727
||| |||||| | ||||||| || | || ||||||||||| | || ||||||||||||
Sbjct 673 GGCGCTCTTTCA-CCAAAATATTAGCTGGTGGTAAAGAACCTGCCAA-CCCCAAGAGTTT 730
Query 728 GAAGCTTCCTCCATCGCCGGTGATTGATCCTGACGTCT-TACGATACACTCTTGAGCTAA 786
|||||| |||||| | ||||| ||||||||| | | ||||||||||| |||| |
Sbjct 731 AAAGCTTAATCCATCATTTGAGATTGGTCCTGACGT-TGTCCGATACACTCTCCAGCTCA 789
Query 787 CTCGCGAAGATATCCAAATGCTTCGAGAGAGACTCAAGAGAGA 829
| || ||||||||||||| |||||| |||||||| ||||||||
Sbjct 790 CGCGTGAAGATATCCAAACGCTTCGCGAGAGACTTAAGAGAGA 832
> AT5G39090.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:15643603-15645116 FORWARD LENGTH=1514
Length=1514
Score = 712 bits (385), Expect = 0.0
Identities = 582/676 (86%), Gaps = 18/676 (3%)
Strand=Plus/Plus
Query 10 ACCAAAAAGAAATGGTTTCATCACTTAACATCATCGACGTTG-CACGAGTCACCCCTTCA 68
||| |||| ||||| | ||||||| ||| ||||| ||| || |||||||||| || |||
Sbjct 1 ACC-AAAA-AAATGAATCCATCACTAAACTTCATCCACG-TGTCACGAGTCACGCCATCA 57
Query 69 AACTCTGAA-TCGACCGAC-TCACTCACTCTCCCACTAACCTTCTTCGACCTCCTCTGGT 126
|||||| || ||| || | |||||||||||||| || || ||||| ||||| ||||||
Sbjct 58 AACTCT-AACTCG-TCGGCGTCACTCACTCTCCCGCTCACTTTCTTTGACCTTCTCTGGC 115
Query 127 TCAAGATTC-ACGCCGTGGAACGAGTCATCTTCTACAGACTCAACGACGCAACTTGCTCT 185
|||| | | | ||||| ||||||||||||||||||| ||||| ||||| || | |||||
Sbjct 116 TCAA-ACACAAAGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGTAAATCGCTCT 174
Query 186 TTCTTTGACTCAGTCATCGTCCCCAATCTCAAAACCTCTCTCTCCTTATCCCTCTCTCAC 245
|| || |||||||||||||||||||| |||||| |||||||||||| |||||||||||||
Sbjct 175 TTATTCGACTCAGTCATCGTCCCCAACCTCAAATCCTCTCTCTCCTCATCCCTCTCTCAC 234
Query 246 TATCTCCCACTCGCCGG-AAAACTCGTCTGGAAACCATTTGAACCCAAACC-AAGCATTG 303
|| |||||||||||||| | | || ||||| ||||| ||| || ||||| || || |
Sbjct 235 TACCTCCCACTCGCCGGCCATA-TCATCTGGGAACCACATGATCCAAAACCGAA-AATCG 292
Query 304 TATACACCCCAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCCGATTTCTCCC 363
| ||||||| |||||||||||||||||||||||| || ||||||||| | ||||||||||
Sbjct 293 TCTACACCCAAAACGACGCCGTTTCATTCACCGTAGCTGAGTCAAACTCGGATTTCTCCC 352
Query 364 GCTTAACCGGAATAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTAC 423
|||||||||| |||||| |||||||||| |||||| |||||||||||||| |||||||
Sbjct 353 TTTTAACCGGAAAAGAACCTTTCTCCTCCACCGAGTTACACCCATTAGTCCCGGAGTTAC 412
Query 424 AAAACTCCGACGACTCGGCTTCCGTCATGTCATTTCAAGTCACGTTATTTCCAAACCAAG 483
|||||||||||||||| || | ||| |||| ||||||||||||||||||||||||||||
Sbjct 413 AAAACTCCGACGACTCAGCAGCAGTCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAG 472
Query 484 GGTTTTGCATCGGCGTAACCGCACACCATGCCGTTTCTGATGGGAAAACGACAACCACTT 543
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 473 GGTTTTGCATCGGCGTAACCACACACCATGCCGTTTCTGATGGGAAAACGACAACCACGT 532
Query 544 TTCTCAAATCTTGGGCTCACTTCTGTAAACACCAAGATTCTTCTCTACCGGAGGATCTGA 603
|||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||| |
Sbjct 533 TTCTCAAATCTTGGGCTCACTTATGTAAACATCAAGACTCTTCTCTACCGGATGATCTAA 592
Query 604 TTCCGTTTTACGATCGTACGGTCATAAAAAATCCACCGAATAGTGATA-TAAAACTTTTG 662
||||||||||||||||||||||||||||| ||||||| | | ||||| |||| | |||
Sbjct 593 TTCCGTTTTACGATCGTACGGTCATAAAAGGTCCACCGGAGATTGATACTAAAG-TCTTG 651
Query 663 AAC-TCATGGCACTCT 677
|| | |||||||||
Sbjct 652 AAAATT-TGGCACTCT 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69527754825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5