BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947933

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G39010.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   534    3e-151


> AT5G39010.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G39782.1); 
Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:15615948-15616457 
FORWARD LENGTH=510
Length=510

 Score =  534 bits (289),  Expect = 3e-151
 Identities = 450/521 (86%), Gaps = 37/521 (7%)
 Strand=Plus/Plus

Query  22   ATGATAAACTTGGAGCAAGAAGCCAAA-AGAA--AG--C-AGATTCGTGATGGCAAAAGA  75
            ||||||||||||||| ||||||||||| ||||  ||  |  ||||||||| || ||||||
Sbjct  1    ATGATAAACTTGGAGAAAGAAGCCAAAGAGAAGCAGATCTTGATTCGTGACGGAAAAAGA  60

Query  76   AAAATTGATCATCACGTAAATACAACGTTACTCGTGAAGATTTTTGAAGCATTCGCAATC  135
            ||||| | ||||||||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct  61   AAAATCGTTCATCACGTAAATACAACGCTACTCGTGAAGATTTATGAAGCATCCGCAATC  120

Query  136  GATGACAGAGATC--TCT-TGAAACCTTACTATGG--CA-GTAACTACTATTTTATCAAG  189
            ||||||||| |||  | | ||||||||||||||||  ||  |||||||||||| ||||||
Sbjct  121  GATGACAGACATCTTTTTCTGAAACCTTACTATGGCCCACCTAACTACTATTTCATCAAG  180

Query  190  GCATGGTTAGACGATACCAAACAATACGGAACATATGTGGTAAAAGGTTTCAAAGACTAC  249
            |||||||||||||| |||||| |||||||||||||||||||   |      ||||   ||
Sbjct  181  GCATGGTTAGACGACACCAAAGAATACGGAACATATGTGGT---A------AAAG---AC  228

Query  250  TCTTTTGCGGTTAATCAA-GA--AATGAAGATTCCTTTAGATTTTCCTGCACAGTATCTT  306
            ||||||  ||||||||||  |  | |||||||||||||| ||||||||||||| ||||||
Sbjct  229  TCTTTTAAGGTTAATCAACCACCACTGAAGATTCCTTTAAATTTTCCTGCACAATATCTT  288

Query  307  TACATAGAATTGCTTAAAGGATTCTCGTATAGAGATCCTGGAACATCCAACGGAACTGTT  366
            ||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct  289  TACGTAGAATTGCTTAAAGGAATGTCGTATAGAGATCCTGGAACATCCAACAGAACTGTT  348

Query  367  GTGATGGGTCGTGCAAAGATTCGATTGCCTCCTCT--T-ACCAGCTATAA-G-GTG---G  418
            ||||||||||||||||||||||||||| |||||||  | ||||||||||| | | |   |
Sbjct  349  GTGATGGGTCGTGCAAAGATTCGATTGTCTCCTCTGATGACCAGCTATAAGGAGAGACCG  408

Query  419  -TCTCCGGTGACATCGATCTCGTCGGTTTGAATAGTGATCAATGTGTCGTGAAAAAGGGA  477
             ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  409  ATCTCCGGTGGCATCGATCTCGTCGGTTTGAATAGTGATCAATGTGTCGTGAAAAAGGGT  468

Query  478  AACCTAAAATATGCTATGAAAATTCATAGGTATGTCGCATT  518
             |||||| ||||||||||||| ||||||||| || || |||
Sbjct  469  TACCTAACATATGCTATGAAACTTCATAGGTCTG-CGGATT  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26372927175


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5