BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947941
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38895.3 | Symbols: | RING/U-box superfamily protein | chr5... 1114 0.0
AT5G15790.1 | Symbols: | RING/U-box superfamily protein | chr5... 154 1e-36
> AT5G38895.3 | Symbols: | RING/U-box superfamily protein | chr5:15571254-15573416
FORWARD LENGTH=1130
Length=1130
Score = 1114 bits (603), Expect = 0.0
Identities = 672/706 (95%), Gaps = 2/706 (0%)
Strand=Plus/Plus
Query 2 AAGTTTTGATTTTGAAGATATGGGTGCTTTCTGTTGTTGCTTTCAAGTTGATCTCTTTGA 61
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 AAGTATTGATTTCGAAGATATGGGTGCTTTCTGTTGTTGCTTTCAAGTTGATCTCTTTGA 404
Query 62 GAGTTATGTGAATCCAAACACTTCAATGACTAGGAACTGTCCTTGCCTAAATTGCTTCCT 121
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 405 GAGTTATGTGAATCCAAACACTTCCATAACTAGGAACTGTCCTTGCCTTAATTGCTTCCT 464
Query 122 CCAGAGTTTCATGGATTTGTATGCGTCGTTGTTTAATAGAGGGGGAATGCATCCAATACC 181
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 465 CCAGAGTTTCATGGATTTGTATGCTTCGTTGTTTAGTAGAGGGGGAATGCATCCAATACC 524
Query 182 TTCAACTGTTGAGACTGCTACAGTGATGAATTCAACAACTGCACTCGATGACTCTCTATC 241
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 525 TTCAACTGTAGAGACAGCTACAGTGATGAATTCAACAACTGCACTTGATGACTCTCTGTC 584
Query 242 TAGTGTGTATCATTCTCCTCCAACACCATTGCCTTACGATGCTGATCCTAGGTACTTTCG 301
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TAGTGTATATCATTCTCCTCCAACACCATTGCCTTACGATGCTGATCCTAGGTACTTTCG 644
Query 302 TTTTGTTAAGGGCTC-AGGCCACTCAGGTGAAGAATCAGAACCATTAAGAGGTGATACTG 360
||||||||||||||| | | || |||||||||||||||||||| ||||||||||||||||
Sbjct 645 TTTTGTTAAGGGCTCTA-GTCATTCAGGTGAAGAATCAGAACCGTTAAGAGGTGATACTG 703
Query 361 AAATGAGTTCTGAAGCTTTGGGTGGTGGTGGAACCAAAAGGAGTAAGTCTGATTCTGATG 420
|||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |
Sbjct 704 AAATGAGTTCTGAAGCTTTGGGTGATGGTGGAGCCAAGTGGAGTAAGTCTGATTCTGAAG 763
Query 421 ATGGTTCGAAAGAAGTGTATTCCAAAGGTTCATTAACCATTGCAAAGTCGAAAACAATGC 480
|||||||||||||||||||| | |||||||||| |||| || ||||||||||||||||||
Sbjct 764 ATGGTTCGAAAGAAGTGTATACGAAAGGTTCATCAACCTTTACAAAGTCGAAAACAATGC 823
Query 481 CCGGGATAGAAATTCATTATGCAGAATCGGATGATGAAGATATTTGTCCAACCTGCCTTG 540
| ||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 824 CGGGGATAGAAGTTTATTATGCAGATTCGGATGATGAAGATATTTGTCCAACCTGCCTTG 883
Query 541 ATGATTACACTCCGGAGAATCCAAAGATAATCACCAAGTGTTCTCACCATTTCCACCTTA 600
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 884 ATGATTACACTTTGGAGAATCCGAAGATAATCACCAAGTGTTCTCACCATTTCCACCTTA 943
Query 601 GCTGTATTTATGAATGGATGGAGAGAAGTGAAACTTGCCCCGTCTGTGGAAAGGTGATGG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 GCTGTATTTATGAATGGATGGAGAGAAGTGAAACTTGCCCCGTCTGTGGAAAGGTGATGG 1003
Query 661 CATTTGATGAAAATGAAACTTCTTAGCATTGTAATAAAGACTTGCT 706
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CATTTGATGAAAATGAAACTTCTTAGCATTGTAATAAAGACTTGCT 1049
> AT5G15790.1 | Symbols: | RING/U-box superfamily protein | chr5:5148744-5151433
FORWARD LENGTH=1534
Length=1534
Score = 154 bits (83), Expect = 1e-36
Identities = 133/157 (85%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 506 ATCGGATGATGAAGATATTTGTCCAACCTGCCTTGATGATTACACT-CCGGAGAATCCAA 564
||| |||||||||||| | |||||||| || ||||| || |||| | | ||||| || |
Sbjct 891 ATCTGATGATGAAGATGTCTGTCCAACGTGTCTTGAAGAATACA-TATCAGAGAACCCGA 949
Query 565 AGATAATCACCAAGTGTTCTCACCATTTCCACCTTAGCTGTATTTATGAATGGATGGAGA 624
|||| | || ||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 950 AGATTGTTACAAAGTGTTCTCACCATTTCCACCTCAGTTGCATTTATGAATGGATGGAGA 1009
Query 625 GAAGTGAAA-CTTGCCCCGTCTGTGGAAAGGTGATGG 660
||||||||| || |||| || ||||||||||||||||
Sbjct 1010 GAAGTGAAAACT-GCCCTGTTTGTGGAAAGGTGATGG 1045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34209454107
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5