BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947945
Length=928
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38860.1 | Symbols: BIM3 | BES1-interacting Myc-like protein... 1096 0.0
AT1G69010.1 | Symbols: BIM2 | BES1-interacting Myc-like protein... 97.1 3e-19
> AT5G38860.1 | Symbols: BIM3 | BES1-interacting Myc-like protein
3 | chr5:15558956-15561126 FORWARD LENGTH=1239
Length=1239
Score = 1096 bits (593), Expect = 0.0
Identities = 826/935 (88%), Gaps = 29/935 (3%)
Strand=Plus/Plus
Query 12 CATCGAACAATGAACTCTCCTGACGTCGATGAGCAATTAGAAGCAGAAGTATACAGTAAC 71
|||||||| |||||||||| ||| ||||||| || ||||||||||| ||||||||||||
Sbjct 119 CATCGAACTATGAACTCTCATGATATCGATGATCAGTTAGAAGCAGATGTATACAGTAAC 178
Query 72 TTACCTTCCCGAAATGATTCATCAACAGGGAGGAGAAATCGAAGCTCGTGTAGATCGAAA 131
|| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 179 TTGCCTTCTCGAAATGATTCTTCAACAGGGAGGAGAAATCGAAACTCGTGTAGATCGAAA 238
Query 132 CACTCAGAAACAGAGCAACGAAGAAGAAGCAAAATCAATGAAAGATTTCAGAGTTTAATG 191
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CACTCAGAGACTGAGCAACGAAGAAGAAGCAAAATCAATGAAAGATTTCAGAGTTTAATG 298
Query 192 GATATAATACCTCAGAATCAGAATGATCAGAAACGAGATAAAGCTTCTTTCTTATTGGAG 251
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 GATATTATACCTCAGAATCAGAATGATCAGAAACGAGATAAAGCTTCTTTCTTGTTGGAG 358
Query 252 GTTATAGAGTATATTCACTTTCTACAAGAAAAAGTTCACATGTATGAAGGATCTGATCAC 311
||||||||||||||||||||||| ||||||||||||||||||||||||| || | ||||
Sbjct 359 GTTATAGAGTATATTCACTTTCTTCAAGAAAAAGTTCACATGTATGAAG-AT-TC-TCAC 415
Query 312 CAAATGTGGTATCAAGGGCCAACCAAATTGATTCCATGGAGAAATAATTATGGGTCTGTT 371
||||||||||||||| ||||||||||||||||| |||||||||| | |||||||||||
Sbjct 416 CAAATGTGGTATCAATCCCCAACCAAATTGATTCCTTGGAGAAATAGTCATGGGTCTGTT 475
Query 372 GTGGAGGTCAATGACCAACCTCAAATCGTTAAGAGCTTTTCAAGTAATGATAACGTTGCT 431
| ||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 476 GCGGAGGAAAATGACCATCCTCAAATCGTTAAAAGCTTTTCAAGTAATGATAAAGTTGCT 535
Query 432 GCTTCTTCCGGTTTGCTCTCGGATATGCAAAATT-ACGCGGATCCTGATATCGACTCAGC 490
|||||||| ||||| |||| ||||| | | |||| | | |||||||||| ||||||||
Sbjct 536 GCTTCTTCGGGTTTTCTCTTGGATACGTACAATTCA-GTAAATCCTGATATTGACTCAGC 594
Query 491 AGTTAATACCAAGATTCTTGAAGACGGTCCTATTTCAGCAGTTCCATCGTATCTACCAAC 550
||||| |||||||||| |||| || ||||| ||||||||||| |||||||||||| ||
Sbjct 595 AGTTAGCACCAAGATTCCTGAACACAGTCCTGTTTCAGCAGTTTCATCGTATCTACGTAC 654
Query 551 CGAGCCTTCGCTGCAGTTTGTTCAGCATGACTTTTGGAAACCAAAA-CAAAT-------C 602
||||||||||||||||||||||||||||||||||||| |||||||| ||| | |
Sbjct 655 CGAGCCTTCGCTGCAGTTTGTTCAGCATGACTTTTGGCAACCAAAAACAAGTTGTGGAAC 714
Query 603 AATTG-CAAT---ACAGATGATTTGTTCAAC-TCAAACGAGGCTATATCACCCAGCTTGT 657
|||| | | ||| |||| ||||| ||| || |||| | |||| |||||||||
Sbjct 715 AATTAACTGTTTTACAAATGAATTGTT-AACATCTGACGAAAAAACATCAGCCAGCTTGT 773
Query 658 CCACCGTCTGTTCACAAAGGGTACT-ACACACTTTAACTGAAGCACTTAAGTCATCGGGT 716
|||| ||||| |||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 774 CCACTGTCTGCTCACAAAGGGTACTTA-ACACTCTAACTGAAGCACTTAAGTCATCGGGT 832
Query 717 GTTAACATGCCAGAGACCACGATATCTGTGCACTTAAGCCTTCGGAAAAGAGCAGATCGC 776
||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct 833 GTTAACATGTCAGAGACCATGATATCTGTGCAGTTAAGCCTTCGGAAAAGAGAAGATCGC 892
Query 777 GAGTATTCT-TCTGCTGCTTTTGCTTCTGAGGATAATTGTAATGGCATCGC-GCATGAAG 834
||||||||| | |||||| |||||||||||||||||| ||||| ||||||| | ||||||
Sbjct 893 GAGTATTCTGT-TGCTGCGTTTGCTTCTGAGGATAATGGTAATAGCATCGCTG-ATGAAG 950
Query 835 AAGGAGATTCTCCTACTGAAACTAGAAGCTTCTGCAGTGATATAGATCATTCCCAGAAGA 894
|||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 951 AAGGGGACTCTCCTACTGAAACTAGAAGCTTCTGCAATGATATTGATCATTCCCAGAAGA 1010
Query 895 GAACAAGAAGATAAAAGATCTGTTTATT-TATTTT 928
||| |||| ||||| |||||| || || ||||||
Sbjct 1011 GAATAAGACGATAA--GATCTGGTT-TTCTATTTT 1042
> AT1G69010.1 | Symbols: BIM2 | BES1-interacting Myc-like protein
2 | chr1:25941675-25943836 FORWARD LENGTH=1302
Length=1302
Score = 97.1 bits (52), Expect = 3e-19
Identities = 172/225 (76%), Gaps = 27/225 (12%)
Strand=Plus/Plus
Query 144 GAGCAACGAAGAAGAAGCAAAATCAATGAAAGATTTCAGAGT-TTAATG-GATA-TAATA 200
|||||||| ||||||||||||||||||||||||||||||| | || | | || | ||||
Sbjct 289 GAGCAACGTAGAAGAAGCAAAATCAATGAAAGATTTCAGA-TATTGA-GAGA-ACTAATT 345
Query 201 CCTCAGAATCAGAATGATCAGAAACGAGATAAAGCTTCTTTC-TTATTGGAGGTTATAGA 259
|| || | ||| ||| || ||||| || | ||||| ||| || || ||||| |||||
Sbjct 346 CC-CA-A--CAG--TGAACAAAAACGTGACACTGCTTCATTCCTT-TTAGAGGTGATAGA 398
Query 260 GTATATTCACT-TTCTACAAGAAAAAGTTCACATGTATGAAGGATC-TGATCACCAAATG 317
||| |||| | || ||||||| || || || | |||||||||||| | ||| | | |
Sbjct 399 TTATGTTCAGTATT-TACAAGAGAAGGTGCAAAAGTATGAAGGATCGT-ATC-C-AGGT- 453
Query 318 TGGTA-TCAAGGG-CCAACCAAA-TTGATTCCATGGAGAAATAAT 359
||| | ||| || ||||| ||| |||| |||||||| ||||||
Sbjct 454 TGG-AGTCA-GGAACCAAC-AAAGTTGACGCCATGGAGGAATAAT 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45361434741
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5