BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947950
Length=571
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38800.1 | Symbols: AtbZIP43, bZIP43 | basic leucine-zipper ... 669 0.0
> AT5G38800.1 | Symbols: AtbZIP43, bZIP43 | basic leucine-zipper
43 | chr5:15538197-15538802 REVERSE LENGTH=606
Length=606
Score = 669 bits (362), Expect = 0.0
Identities = 508/574 (89%), Gaps = 28/574 (5%)
Strand=Plus/Plus
Query 21 ATGCAACCAGCAACCAACATTTTCAGCCTCCATGGTTGCCCACCTTCGTACCTCTCCCAT 80
||||||||| | ||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGCAACCATCCACCAACATTTTTAGCCTCCATGGTTGTCCACCTTCGTACCTTTCCCAT 60
Query 81 -TTCCCTACATCCACGCCATTTTGCGGACAAAACCCTAATCCATTCTTCAGCTTCGAAAG 139
|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATT-CCTACATCCTCACCATTTTGCGGACAAAACCCTAATCCATTCTTCAGCTTCGAAAC 119
Query 140 TGGTGTGTATACTCCACAGTTCATGAGTTTG---AGCAGCAACAACTCGACCTCAGAAGA 196
||| ||| | ||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 120 TGGCGTGAACACTTCACAGTTCATGAGTTTGATCAGCAGCAACAACTCGACCTCAGATGA 179
Query 197 AGGAGAAGAGAATCTTACA-GAGATATTCAATGAGCGGAAGCAAAAGAGGAAGATATCGA 255
|| ||||||||||| || | |||||| | |||||| |||||||||||||||||||||| |
Sbjct 180 AGCAGAAGAGAATCATA-AGGAGATAATAAATGAGAGGAAGCAAAAGAGGAAGATATCTA 238
Query 256 ACAGAGAATCGGCCAGGAGATCGCGTATGAGGAAGCAGAGACAGGCAGATGAGCTTTGGT 315
||||||||||||| || |||||||||||||||||||||||||| | |||||||||||||
Sbjct 239 ACAGAGAATCGGCAAGAAGATCGCGTATGAGGAAGCAGAGACAAGTGGATGAGCTTTGGT 298
Query 316 CACAGGTGATGTGGCTTAGGAATGAGAATCATCAGTTGCTTCGTAAGCTTAACTGCGTTT 375
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 299 CACAGGTGATGTGGCTTAGGGATGAGAATCATCAGCTGCTTCGTAAGCTTAACTGCGTTT 358
Query 376 TAGAGTCTCAAGAGAAGGTTATTGAAGAGAATGCTCAGCTCAAAGAGGAAACCTCTGAGC 435
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 359 TAGAGTCTCAAGAGAAGGTTATTGAAGAGAATGTTCAGCTCAAAGAGGAAACCACTGAGC 418
Query 436 TTAAGCACCTGATTAGTGATATGCAGCTTCAGAATCAAAGTCCTTTCTCTGGTATCAGAG 495
||||||| |||||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 419 TTAAGCAAATGATTAGTGATATGCAGCTTCAGAATCAGAGTCCTTTCTCTTGCATCAGAG 478
Query 496 ATGAC-A-----TTGTATAGATGATGTTTA-----AGT-----GG--CTCTAGTATGTAT 537
| ||| | ||||||||||||| |||| | | || |||||||||||||
Sbjct 479 ACGACGACGACGTTGTATAGATGATTTTTATTTTTATTTTTTTGGGGCTCTAGTATGTAT 538
Query 538 CTATAAATGTATATCCAGAGATGATCTGTCTCAG 571
| | |||||||||||||||||| |||||||||
Sbjct 539 CAACAAATGTATATCCAGAGAT---CTGTCTCAG 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27427844262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5