BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947951

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38790.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   601    2e-171


> AT5G38790.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G30580.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:15533785-15534180 FORWARD LENGTH=396
Length=396

 Score =  601 bits (325),  Expect = 2e-171
 Identities = 375/398 (94%), Gaps = 7/398 (2%)
 Strand=Plus/Plus

Query  21   ATGGATAAGGAAGAATGCAGCAGTAGTGAATCCGGTTGGACGACTTATATTTCGTCGCCA  80
            |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| 
Sbjct  1    ATGGATAAAGAAGAATGCAGCAGTAGTGAATCCGGTTGGACAACTTATCTTTCGTCGCCG  60

Query  81   ATTAAAGTAGATGAAGATGAGGTCGTGGATGAGG---ACTACTATGAAGGGTATAACATT  137
            ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct  61   ATTAAAGTAGATGAAGATGAGGTCGTGGATGAGGACTACTACTATGAAGGGTATAACATT  120

Query  138  TATAATTATTCGAGTAAAGTCGAACACGAAGAAGAGAGGAACAAAGATAGTGATGATTCA  197
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  121  TATAATTATTCGAGTAAAGTCGAACACGAAGAAGAGAGGAACAAAGATAGCGATGATTCA  180

Query  198  ATGGCTTCGGATGCTTCGTCGGGGCCAAATTATCAGCGCTATC-ACCAAAAGAACAAGGC  256
            ||||| || ||||||||||| ||||||||||||||||| | || ||||||||||||||||
Sbjct  181  ATGGCCTCAGATGCTTCGTCTGGGCCAAATTATCAGCGGT-TCCACCAAAAGAACAAGGC  239

Query  257  GTTGGATTTGAAGAA-GGGTAAAAATGAAGGTAATACTAAGAGTAAAAATGTTGATGATC  315
            ||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct  240  GTTGGATTTGAAGAACGGG-AAAAATGAAGGTAATTCTAAGAGTAAAAATGATGATGATC  298

Query  316  ATCATAATCATTACCATGACGGTAAGAATACTAGTAACTCATACAGgaaaaaagagaaga  375
            ||||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct  299  ATCATAATCATTATCATGACGGTAAAAAAACTAGTAACTCATACAGGAAAAAAGACAAGA  358

Query  376  aaaagagagaaaaTAAGAGTACCTATAGAATGAAGTGA  413
            |||||||||||||||||||||||||||| |||||||||
Sbjct  359  AAAAGAGAGAAAATAAGAGTACCTATAGGATGAAGTGA  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20559509341


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5