BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947952
Length=263
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38780.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 377 2e-104
> AT5G38780.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:15530015-15531522
FORWARD LENGTH=1215
Length=1215
Score = 377 bits (204), Expect = 2e-104
Identities = 243/262 (93%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 2 AAGCTTTACAATTGAGATGATGGAGATAGTAAGCCATCCATTGGAGGCTATGCAATTATC 61
||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 916 AAGGTTTACAATTGAGATGATGGAGATTGTAAGCCATCCATTGGAGGCTGTGCAATTATC 975
Query 62 CAACAACTTCGTCACTTCTATGTATCGAGCAATTCTCTCTACAGTTATAG-AAGAACACT 120
|||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 976 CAACAACTTCATCACTTCCATGTATCGAGCAATTCTCTCTACAGTTATAGAAAG-ACACT 1034
Query 121 TTGGACATAGTGTGGTCGATGAGCTATTTCGTCGATTTGCTAAGAAACTTTCTAAGCATC 180
||||| ||||||||| ||||| ||||| |||| ||||||||||||||| || |||| |
Sbjct 1035 TTGGAGGTAGTGTGGTAGATGAACTATTCCGTCAATTTGCTAAGAAACTCTCCGAGCACC 1094
Query 181 CGATTGATTTTGAAAAGTGTAAGAAGCAAATGGTCTATCATATCATTCTTAAACGAAAGT 240
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1095 CGATTGATTTTGAAAAGTGTAAGAAACAAATGGTCTATCATATCGTTCTTAAACGAAAGT 1154
Query 241 GAATATTGAGATTATCCAAAAC 262
||||||||||||||||||||||
Sbjct 1155 GAATATTGAGATTATCCAAAAC 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12013992011
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5