BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947954
Length=254
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38770.1 | Symbols: AtGDU7, GDU7 | glutamine dumper 7 | chr5... 254 4e-67
> AT5G38770.1 | Symbols: AtGDU7, GDU7 | glutamine dumper 7 | chr5:15526114-15526407
FORWARD LENGTH=294
Length=294
Score = 254 bits (137), Expect = 4e-67
Identities = 203/232 (88%), Gaps = 15/232 (6%)
Strand=Plus/Plus
Query 22 ATGAGTCTGGATATTGATTCGATGGTCCTGGTTAACTCCGGGTTAGAGAACTTAAACTCT 81
||||||||| ||| ||||| ||||||| |||||||||| ||||||||||| | |||||
Sbjct 1 ATGAGTCTGCATAGGGATTCAATGGTCCCGGTTAACTCCAGGTTAGAGAACATGGACTCT 60
Query 82 CCAATTCTCTCTAAGATTTGTGCGTGGGGAGTAATGCTGGGGCTCTTTGCGCTTTCATTG 141
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CCGATTCTCTCTAAGATTTGTGCGTGGGGCGTAATGCTGGGGCTCTTTGCGCTTTCATT- 119
Query 142 AT-CGCTACGGCCTATGCTTGCTATATCATAAGCAAAACGCTTCGAATTCATGCATTGAA 200
|| ||||| |||||||||||||||| |||||||||| | ||||||||||||||| |||
Sbjct 120 ATTCGCTATGGCCTATGCTTGCTAT--CATAAGCAAA-C--TTCGAATTCATGCATCGAA 174
Query 201 AAGCAAGAGAAACAAGGAAAGAGGCATAG-GTTGAAGCCACTAGATATGGAA 251
| | || || |||||||||| ||| || ||||||||||||||||||||||
Sbjct 175 --G-A-GA-AA-CAAGGAAAGAAGCA-AGTGTTGAAGCCACTAGATATGGAA 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11561582270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5