BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947956

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38770.1 | Symbols: AtGDU7, GDU7 | glutamine dumper 7 | chr5...   374    4e-103


> AT5G38770.1 | Symbols: AtGDU7, GDU7 | glutamine dumper 7 | chr5:15526114-15526407 
FORWARD LENGTH=294
Length=294

 Score =  374 bits (202),  Expect = 4e-103
 Identities = 273/305 (90%), Gaps = 13/305 (4%)
 Strand=Plus/Plus

Query  21   ATGAGTCTGGATAGTGATTCAATGGTCCCGGTT-ACTTCCGGGTTAGAAAACTTAAACTC  79
            ||||||||| |||| |||||||||||||||||| || ||| ||||||| ||| |  ||||
Sbjct  1    ATGAGTCTGCATAGGGATTCAATGGTCCCGGTTAAC-TCCAGGTTAGAGAACATGGACTC  59

Query  80   TCCAATTCTCTCCAAGATTTGTGCGTGGGGAGTAATGTTGGGGCTATTTGCGATTTCATT  139
            ||| |||||||| ||||||||||||||||| |||||| ||||||| |||||| |||||||
Sbjct  60   TCCGATTCTCTCTAAGATTTGTGCGTGGGGCGTAATGCTGGGGCTCTTTGCGCTTTCATT  119

Query  140  GA-TCGCTATGGCCTATGCTTGCTATCACAAGCAACACGCTTCGAATTCATGTATCGAAG  198
             | ||||||||||||||||||||||||| |||||| |  ||||||||||||| |||||||
Sbjct  120  -ATTCGCTATGGCCTATGCTTGCTATCATAAGCAA-A--CTTCGAATTCATGCATCGAAG  175

Query  199  AGCAAGAGAAATCAGGAAAGAAGCAAGTGTTGAAGCCACTAGATATGGAACCAAAGATTG  258
            ||  | | | |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  AG--A-A-ACA--AGGAAAGAAGCAAGTGTTGAAGCCACTAGATATGGAACCAAAGATTG  229

Query  259  TTGTTATAATGGCTGGTAATGAAAACCCTACCTTCTTTGCCAAGCCAACCAAGATCAATG  318
            |||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct  230  TTGTAATAATGGCTGGTAATGAAAACCCTACCTTCTTTGCTAAGCCAACCCAGATCAATG  289

Query  319  CATGA  323
            |||||
Sbjct  290  CATGA  294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16085679680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5