BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947963 Length=1148 Score E Sequences producing significant alignments: (Bits) Value AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504... 1360 0.0 AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:112... 514 7e-145 AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964... 486 2e-136 > AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504-22003385 FORWARD LENGTH=1125 Length=1125 Score = 1360 bits (736), Expect = 0.0 Identities = 985/1102 (89%), Gaps = 29/1102 (3%) Strand=Plus/Plus Query 28 TTAAATTTGAGGAAGGATGGTCC-TCCTTGCAGAAAGGTATTACCGAAG-TGATAAGGA- 84 ||||||||||||||||||||||| | || ||||||||||||||| ||| ||||||||| Sbjct 35 TTAAATTTGAGGAAGGATGGTCCAACATT-CAGAAAGGTATTACC-AAGCTGATAAGGAT 92 Query 85 TCATAGAAGAAGAGCCGGAACCAGCATTTAAACCTCAGCT--AGGTGTCAATCTTTACAC 142 || |||||| |||||| |||||| ||||| | | || | | || | || |||||||| Sbjct 93 TC-TAGAAGGAGAGCCTGAACCAACATTT-TATTTTAG-TGAATGTTTTAAACTTTACAC 149 Query 143 GACAATCTACGATATGTGCACCCA-AAAACCAGATTACTCACATCAGCTTTATGAGAAGT 201 || |||||||||||||| ||| | | || ||||| ||||| ||||||||||| |||| Sbjct 150 GATTATCTACGATATGTGTGTCCAGAGATCC-GATTATTCACAGCAGCTTTATGAAAAGT 208 Query 202 ATCTTCAAGTAATTGAAGATTATACTATCCAAACGGTGTTGCCTTCTTTAAGGGAGAAGC 261 ||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 209 ATCGTAAAGTAATTGAAGATTATACTATCCAAACGGTGTTGCCGTCTTTAAGGGAGAAGC 268 Query 262 ATGATGAACATATGCTAATAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTTTGGTTA 321 |||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||| | Sbjct 269 ATGATGAAGATATGCTAAGAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTATGGTCA 328 Query 322 CATTTTTAACCAACATT-TTCCATTATATCGACCGTTACTTGGTTCCTCGGACT-A-A-T 377 || |||| ||| || ||| |||||| |||||| ||||||||| ||||| | | | | Sbjct 329 AATGGTTAAGCAA-GTTCTTCGTTTATATTGACCGTCACTTGGTTCGTCGGAGTAAGATT 387 Query 378 ---ATTCCATCACTAGATGAAGTTGGATTGACATGCTTCCTTGACCTGGTTTATTCTGAG 434 ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 388 CCAATTCCATCACTAGATGAAGTTGGATTGACATGCTTTCTTGACCTGGTTTATTGTGAG 447 Query 435 ATGCAATCCATGGCCACAA-AAGCTGTAGTAGCACTTATTCATAAAGAACGTGAGGGCGA 493 ||||| |||| ||||| || ||| |||| ||||||||||||||||||||||||||||||| Sbjct 448 ATGCAGTCCACGGCCA-AAGAAGTTGTAATAGCACTTATTCATAAAGAACGTGAGGGCGA 506 Query 494 AGAGATTGATAGGGCACTAGTGAAGAACGTATTAGATGTCTATGTGGATAATGGGATGGG 553 | |||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 507 ACAGATAGATAGGGCACTAGTGAAGAACGTATTAGATATCTATGTGGAGAATGGGATGGG 566 Query 554 AACCACT-GAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTTCAAGATACTGCTTCTT 612 |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 567 AACC-TTGGAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTTCAAGATACTGCTTCTT 625 Query 613 ACTATTCTCGCAAGGCGTCAAGGTGGATCGAGGAGGATTCTTGTCCTGATTACATGATAA 672 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 626 ACTATTCTCGCAAGGCGTCAAGGTGGACCGAGGAGGATTCTTGTCCTGATTACATGATAA 685 Query 673 AGGTTGAGGAGTGTCTAAAGAGGGAGAGGGAGAGAGTCACTCACTATCTCCATTCAAGCA 732 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 686 AGGTTGAGGAGTGTCTAAAGATGGAGAGGGAGAGAGTCACTCACTATCTCCATTCAATTA 745 Query 733 CTGAACCCAAACTAGTTGAGAAAGTACAAAATC-AATTGTTGGTAATGGTTGCAAAAAAC 791 | ||||||||||||||||||||| ||||||| | |||||||||| |||||| |||||||| Sbjct 746 CCGAACCCAAACTAGTTGAGAAAATACAAAA-CGAATTGTTGGTTATGGTTACAAAAAAC 804 Query 792 CGTCTAGAAAATGAGCATTCAGGGTGCT-GTGCATTGCTAAGAGATGACAAGAAGAATGA 850 || |||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| Sbjct 805 CGCCTAGAAAATGAGCACTCAGGGTT-TAGTGCATTGCTAAGAGATGACAAGAAGAATGA 863 Query 851 TCTCTCTAGGATGTACAGTCTTTATCATCCAATCCCTCATAGGTTAGAACGTATTGCAGA 910 |||||||||||| ||| ||||||||| |||||||||| | ||||| | |||| ||||||| Sbjct 864 TCTCTCTAGGATATACCGTCTTTATCTTCCAATCCCTAAGAGGTTGGGACGTGTTGCAGA 923 Query 911 CTTATTCAAAAAGCATATTACTGAAGAGGGGAATGCCCTTATCAAACAAGCTGACGACGC 970 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 924 CTTATTCAAGAAGCATATTACTGAAGAGGGAAATGCCCTTATCAAACAAGCTGACGACAA 983 Query 971 AACTACTAATCAACTACTAATTGAGCTACACAATAAGTACATGGTTTATGTCACCGAGTG 1030 |||||||||||||||||||||||||||||||||||||| ||| || ||||||| |||||| Sbjct 984 AACTACTAATCAACTACTAATTGAGCTACACAATAAGTTCATTGTCTATGTCATCGAGTG 1043 Query 1031 TTTTCAGAACCACAGGTTCTTCCATAAGGTTAGAGTGT-GTTCATGGGTGTCTATCTTTT 1089 |||||| ||||||| ||||||||||||||||||| | ||||||| ||||||||||||| Sbjct 1044 TTTTCAAAACCACACCCTCTTCCATAAGGTTAGAGTTTTGTTCATGTGTGTCTATCTTTT 1103 Query 1090 CCCACAATATTTTATTGAATGA 1111 || |||||||| ||| |||||| Sbjct 1104 CCAACAATATTATATCGAATGA 1125 > AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:1128622-1133696 FORWARD LENGTH=2747 Length=2747 Score = 514 bits (278), Expect = 7e-145 Identities = 680/871 (78%), Gaps = 40/871 (5%) Strand=Plus/Plus Query 135 CTTTACACGACAATCTACGATATGTGCACCCA-AAA---AC-CA-GATTACTCACATCAG 188 ||||| ||||| |||||| | ||||||||||| ||| | || ||||||||||| ||| Sbjct 393 CTTTATACGACTATCTACAACATGTGCACCCAGAAACCTCCTCATGATTACTCACAGCAG 452 Query 189 CTTTATGAGAAGTATCTTCAAGTAATTGAAGATTATACTATC-CAAACGGTGTTGCCTTC 247 |||||||| ||||||| ||| | |||| || |||| || | | ||| || |||||| | Sbjct 453 CTTTATGACAAGTATCGGGAAGCATTTGAGGAATATATTAACTC-AACAGTTTTGCCTGC 511 Query 248 TTTAAGGGAGAAGCATGATGAACATATGCTAATAGAGCT-TGTTAAGAGGTGG-AATAAC 305 || ||||||||||||||||| |||||| ||||| | |||| || ||| | ||| Sbjct 512 GTTGAGGGAGAAGCATGATGAGTTTATGCTGCGGGAGCTAT-TTAAAAGATGGTCA-AAC 569 Query 306 CATAAAATTTTGGTTACATTTTTAACCAACATT-TTCCATTATATCGACCGTTACTTGGT 364 |||||| | |||| | || || || | || ||| | || | ||||||||||| | Sbjct 570 CATAAAGTAATGGTCAGATGGCTATCCCGC-TTCTTCTACTACCTTGACCGTTACTTCAT 628 Query 365 TCCTCGGACTAAT-A-TTCCATCACTAG-ATGAAGTTGGATTGACATGCTTCCTTGACCT 421 | |||||| || | ||||| |||| | |||||||||| |||||||||||| |||||| Sbjct 629 TGCTCGGA--GATCACTTCCACCACT-GAATGAAGTTGGCCTGACATGCTTCCGTGACCT 685 Query 422 GGTTTATTCTGAGATGCAATCCATGGCCACAA-AAGCTGTAGTAGCACTTATTCATAAAG 480 ||||||| |||| | || || | || || || |||||||| |||| ||| || |||||| Sbjct 686 GGTTTATAATGAGCTACATTCTAAGGTCA-AACAAGCTGTAATAGCTCTTGTTGATAAAG 744 Query 481 AACGTGAGGGCGAAG-AGATTGATAGGGCACTAG-TGAAGAACGTATTAGATGTCTATGT 538 |||| ||||||| || ||||||||||||| || | |||| |||||||||||| ||||||| Sbjct 745 AACGGGAGGGCG-AGCAGATTGATAGGGCCCT-GCTGAAAAACGTATTAGATATCTATGT 802 Query 539 GGATAATGGGAT-GGGAACCACT-GAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTT 596 || | ||| || ||| | | | || | |||||||| ||||||||||||||||||||| Sbjct 803 AGAGATTGGAATGGGGCA-GA-TGGAGAGGTATGAAGAAGATTTTGAAAGCTTCATGCTT 860 Query 597 CAAGATACTGCTTCTTACTATTCTCGCAAGGCGTCAAGGTGGAT-CGAGGAGGATTCTTG 655 ||||||||| |||| || |||||||||||||| ||||| ||||| | |||| |||||||| Sbjct 861 CAAGATACTTCTTCGTATTATTCTCGCAAGGCATCAAGCTGGATTC-AGGAAGATTCTTG 919 Query 656 TCCTGATTACATGATAAAGGT-TGAGGAGTGTCTAAAGAGGGAGAGGGAGAGAGTCACTC 714 |||||||||||| | ||| | ||| || |||||||||| ||||||||||||||| ||| Sbjct 920 CCCTGATTACATGTTGAAG-TCTGAAGAATGTCTAAAGAAGGAGAGGGAGAGAGTGGCTC 978 Query 715 ACTATCTCCATTCAAGCACTGAACCCAAA-CTAGTTGAGAAAGTACAAAATCAATTGTTG 773 |||| || || ||||||| ||| || ||| || ||||||||||||||| || ||||| || Sbjct 979 ACTACCTACACTCAAGCAGTGAGCC-AAAGCTGGTTGAGAAAGTACAACATGAATTGCTG 1037 Query 774 GTAATGGTTGCAAAAAACCGTCTAGAAAATGAGCATTCAGGGTGCTGTGCATTGCTAAGA 833 || || |||||| | | ||||||||| || || ||||||||| |||||||||||||| Sbjct 1038 GTTGTGTTTGCAAGTCAGCTTCTAGAAAAAGAACACTCAGGGTGCCGTGCATTGCTAAGA 1097 Query 834 GATGACAAGAAGAATGATCTCTCTAGGATGTACAGTCTTTATCATCCAATCCCT-CATAG 892 ||||||||| | |||||||||| ||||||||||| ||||| ||| ||| | | || Sbjct 1098 GATGACAAGGTGGATGATCTCTCCAGGATGTACAGGCTTTACCATAAAATTT-TGCG-AG 1155 Query 893 G-TTAGAACGTATTGCAGACTTATTCAAAAAGCATATTACTGAAGAGGGGAATGCCCTTA 951 | || |||| | ||||| || | || || ||||| | || | |||||| || || ||| Sbjct 1156 GCTTGGAACCTGTTGCAAACATCTTTAAGCAGCATGTCACAGCAGAGGGTAACGCTCTTG 1215 Query 952 TCAAACAAGCTGACGACGCAACTACTAATCA 982 || |||| || || ||| | |||||||||| Sbjct 1216 TCCAACAGGCCGAAGACACGGCTACTAATCA 1246 > AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964-22006172 FORWARD LENGTH=768 Length=768 Score = 486 bits (263), Expect = 2e-136 Identities = 593/746 (79%), Gaps = 48/746 (6%) Strand=Plus/Plus Query 28 TTAAATTTGAGGAAGGATGGTCCTCCTTGCAGA-AAGGTATTACCGAAG-TGATAAGGAT 85 |||||||||||| || ||||||| | | || | ||||| ||||| ||| ||||||| || Sbjct 20 TTAAATTTGAGGTAGAATGGTCCAACATACA-ACAAGGTTTTACC-AAGCTGATAAGAAT 77 Query 86 CATAGAAGAAGAGCCGGAACCAGCATTTAAACCTCAGCTAGGTGTCA--AT-CTTTACAC 142 ||||||| |||| | |||||||||||| || |||| | | | | || | | || Sbjct 78 GATAGAAGGAGAGTCTGAACCAGCATTT-AA--TCAGGAAATTATGATGATGATGCATAC 134 Query 143 GAC-AATCTA-CGATATGTGCACCCAAAAACCAGATTACTCACATCAGCTTTATGAGAAG 200 | | | | || || ||| ||| || || ||| || | || ||||||||||| ||| Sbjct 135 GGCTACT-TACCG-TATATGC-GCC---TACAAGA--ACCCTCAACAGCTTTATGATAAG 186 Query 201 TATCTTCAAGTAATTGAAG-ATTATACTATCCAAACGGTGTTGCCTTCTTTAAGGGAGAA 259 |||| | || |||||| || ||||| | ||||||||||||||||| ||||||||||| || Sbjct 187 TATCGTGAATTAATTG-AGAATTATGCAATCCAAACGGTGTTGCCATCTTTAAGGGAAAA 245 Query 260 GCATGATGAACATATGCTAATAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTTTGGT 319 |||||||||| ||||||| |||||||| ||||||||||||| ||||||| ||||||| Sbjct 246 GCATGATGAATGTATGCTACGAGAGCTTGCTAAGAGGTGGAATGCCCATAAACTTTTGGT 305 Query 320 TACATT-TTTAAC-CAACATT-TTCCATTATATCGACCG-TTACTTGGTTCCTCGGACTA 375 || ||| |||| | || || || ||| || || || || ||| || || | | Sbjct 306 TAGATTATTTAGCAGAAGGTTGGTCTATT-TA--GA-CGATTCCTTTCTT--TCTAAAAA 359 Query 376 A--TATTCCATCACTAGA-TGAAGTTGGATTGACA-TGCTTCCTTGACCTGGTTTATTC- 430 | |||||||||| || |||||||| |||| | ||||||| |||| |||||| || Sbjct 360 AGGCCTTCCATCACT-GAGGGAAGTTGGCTTGA-ATTGCTTCCGCGACCAGGTTTA-TCG 416 Query 431 TGAGATGCAATCCATGGCCACAAAAGCTGTAGTAGCACTTATTCATAAAGAACGTGAGGG 490 ||| ||||| ||||||||| || ||||| || |||||||||||||||||||||||||||| Sbjct 417 TGAAATGCAGTCCATGGCCGCAGAAGCTATATTAGCACTTATTCATAAAGAACGTGAGGG 476 Query 491 CGAAGAGATTGATAGGGCACTAGTGAAG-AACGTATTAGATGTCTATGTGGATAATGGGA 549 ||| | |||||||| | ||| ||| || |||||| ||||||||| ||| || ||||||| Sbjct 477 TGAACAAATTGATAGAGAACTTGTG-AGAAACGTAATAGATGTCTTTGTTGAGAATGGGA 535 Query 550 TGGGAACCACT-GAAAAATATGAAGAGGATTTTGAAA-GCTTCATGCTTCAAGATACTGC 607 |||||| | || |||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 536 TGGGAA-CTCTAAAAAAATATGAAGAGGATTTTGAAAGGC-TCATGCTTCAAGATACTGC 593 Query 608 TTCTTACTATTCTCGCAAGGCGTCAAGGTGGATCGAGGAGGATTCTTGTCCTGATTACAT 667 ||||||||||||| ||||||| |||||||||||| | ||||| ||||||| |||||||| Sbjct 594 TTCTTACTATTCTAGCAAGGCATCAAGGTGGATCCAAGAGGAGTCTTGTCTTGATTACAC 653 Query 668 GATAAAGGTTGAGGAGTGTCTA-AAGAGGGAGAGGGAGAGAGTCACTCACTATCTCCATT 726 | ||||| | | ||||| || || |||||||||||||||||||||||||| || ||| Sbjct 654 GCTAAAGCCTCAACAGTGTTTACAA-AGGGAGAGGGAGAGAGTCACTCACTACCTTCATC 712 Query 727 CAAGCACTGAACCCAAACTAGTTGAG 752 ||| |||||||||||||||| ||||| Sbjct 713 CAACCACTGAACCCAAACTATTTGAG 738 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56325011490 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5