BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947963
Length=1148
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504... 1360 0.0
AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:112... 514 7e-145
AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964... 486 2e-136
> AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504-22003385
FORWARD LENGTH=1125
Length=1125
Score = 1360 bits (736), Expect = 0.0
Identities = 985/1102 (89%), Gaps = 29/1102 (3%)
Strand=Plus/Plus
Query 28 TTAAATTTGAGGAAGGATGGTCC-TCCTTGCAGAAAGGTATTACCGAAG-TGATAAGGA- 84
||||||||||||||||||||||| | || ||||||||||||||| ||| |||||||||
Sbjct 35 TTAAATTTGAGGAAGGATGGTCCAACATT-CAGAAAGGTATTACC-AAGCTGATAAGGAT 92
Query 85 TCATAGAAGAAGAGCCGGAACCAGCATTTAAACCTCAGCT--AGGTGTCAATCTTTACAC 142
|| |||||| |||||| |||||| ||||| | | || | | || | || ||||||||
Sbjct 93 TC-TAGAAGGAGAGCCTGAACCAACATTT-TATTTTAG-TGAATGTTTTAAACTTTACAC 149
Query 143 GACAATCTACGATATGTGCACCCA-AAAACCAGATTACTCACATCAGCTTTATGAGAAGT 201
|| |||||||||||||| ||| | | || ||||| ||||| ||||||||||| ||||
Sbjct 150 GATTATCTACGATATGTGTGTCCAGAGATCC-GATTATTCACAGCAGCTTTATGAAAAGT 208
Query 202 ATCTTCAAGTAATTGAAGATTATACTATCCAAACGGTGTTGCCTTCTTTAAGGGAGAAGC 261
||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 209 ATCGTAAAGTAATTGAAGATTATACTATCCAAACGGTGTTGCCGTCTTTAAGGGAGAAGC 268
Query 262 ATGATGAACATATGCTAATAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTTTGGTTA 321
|||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||| |
Sbjct 269 ATGATGAAGATATGCTAAGAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTATGGTCA 328
Query 322 CATTTTTAACCAACATT-TTCCATTATATCGACCGTTACTTGGTTCCTCGGACT-A-A-T 377
|| |||| ||| || ||| |||||| |||||| ||||||||| ||||| | | | |
Sbjct 329 AATGGTTAAGCAA-GTTCTTCGTTTATATTGACCGTCACTTGGTTCGTCGGAGTAAGATT 387
Query 378 ---ATTCCATCACTAGATGAAGTTGGATTGACATGCTTCCTTGACCTGGTTTATTCTGAG 434
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 388 CCAATTCCATCACTAGATGAAGTTGGATTGACATGCTTTCTTGACCTGGTTTATTGTGAG 447
Query 435 ATGCAATCCATGGCCACAA-AAGCTGTAGTAGCACTTATTCATAAAGAACGTGAGGGCGA 493
||||| |||| ||||| || ||| |||| |||||||||||||||||||||||||||||||
Sbjct 448 ATGCAGTCCACGGCCA-AAGAAGTTGTAATAGCACTTATTCATAAAGAACGTGAGGGCGA 506
Query 494 AGAGATTGATAGGGCACTAGTGAAGAACGTATTAGATGTCTATGTGGATAATGGGATGGG 553
| |||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 507 ACAGATAGATAGGGCACTAGTGAAGAACGTATTAGATATCTATGTGGAGAATGGGATGGG 566
Query 554 AACCACT-GAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTTCAAGATACTGCTTCTT 612
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 AACC-TTGGAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTTCAAGATACTGCTTCTT 625
Query 613 ACTATTCTCGCAAGGCGTCAAGGTGGATCGAGGAGGATTCTTGTCCTGATTACATGATAA 672
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 626 ACTATTCTCGCAAGGCGTCAAGGTGGACCGAGGAGGATTCTTGTCCTGATTACATGATAA 685
Query 673 AGGTTGAGGAGTGTCTAAAGAGGGAGAGGGAGAGAGTCACTCACTATCTCCATTCAAGCA 732
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 686 AGGTTGAGGAGTGTCTAAAGATGGAGAGGGAGAGAGTCACTCACTATCTCCATTCAATTA 745
Query 733 CTGAACCCAAACTAGTTGAGAAAGTACAAAATC-AATTGTTGGTAATGGTTGCAAAAAAC 791
| ||||||||||||||||||||| ||||||| | |||||||||| |||||| ||||||||
Sbjct 746 CCGAACCCAAACTAGTTGAGAAAATACAAAA-CGAATTGTTGGTTATGGTTACAAAAAAC 804
Query 792 CGTCTAGAAAATGAGCATTCAGGGTGCT-GTGCATTGCTAAGAGATGACAAGAAGAATGA 850
|| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct 805 CGCCTAGAAAATGAGCACTCAGGGTT-TAGTGCATTGCTAAGAGATGACAAGAAGAATGA 863
Query 851 TCTCTCTAGGATGTACAGTCTTTATCATCCAATCCCTCATAGGTTAGAACGTATTGCAGA 910
|||||||||||| ||| ||||||||| |||||||||| | ||||| | |||| |||||||
Sbjct 864 TCTCTCTAGGATATACCGTCTTTATCTTCCAATCCCTAAGAGGTTGGGACGTGTTGCAGA 923
Query 911 CTTATTCAAAAAGCATATTACTGAAGAGGGGAATGCCCTTATCAAACAAGCTGACGACGC 970
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 924 CTTATTCAAGAAGCATATTACTGAAGAGGGAAATGCCCTTATCAAACAAGCTGACGACAA 983
Query 971 AACTACTAATCAACTACTAATTGAGCTACACAATAAGTACATGGTTTATGTCACCGAGTG 1030
|||||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||
Sbjct 984 AACTACTAATCAACTACTAATTGAGCTACACAATAAGTTCATTGTCTATGTCATCGAGTG 1043
Query 1031 TTTTCAGAACCACAGGTTCTTCCATAAGGTTAGAGTGT-GTTCATGGGTGTCTATCTTTT 1089
|||||| ||||||| ||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 1044 TTTTCAAAACCACACCCTCTTCCATAAGGTTAGAGTTTTGTTCATGTGTGTCTATCTTTT 1103
Query 1090 CCCACAATATTTTATTGAATGA 1111
|| |||||||| ||| ||||||
Sbjct 1104 CCAACAATATTATATCGAATGA 1125
> AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:1128622-1133696
FORWARD LENGTH=2747
Length=2747
Score = 514 bits (278), Expect = 7e-145
Identities = 680/871 (78%), Gaps = 40/871 (5%)
Strand=Plus/Plus
Query 135 CTTTACACGACAATCTACGATATGTGCACCCA-AAA---AC-CA-GATTACTCACATCAG 188
||||| ||||| |||||| | ||||||||||| ||| | || ||||||||||| |||
Sbjct 393 CTTTATACGACTATCTACAACATGTGCACCCAGAAACCTCCTCATGATTACTCACAGCAG 452
Query 189 CTTTATGAGAAGTATCTTCAAGTAATTGAAGATTATACTATC-CAAACGGTGTTGCCTTC 247
|||||||| ||||||| ||| | |||| || |||| || | | ||| || |||||| |
Sbjct 453 CTTTATGACAAGTATCGGGAAGCATTTGAGGAATATATTAACTC-AACAGTTTTGCCTGC 511
Query 248 TTTAAGGGAGAAGCATGATGAACATATGCTAATAGAGCT-TGTTAAGAGGTGG-AATAAC 305
|| ||||||||||||||||| |||||| ||||| | |||| || ||| | |||
Sbjct 512 GTTGAGGGAGAAGCATGATGAGTTTATGCTGCGGGAGCTAT-TTAAAAGATGGTCA-AAC 569
Query 306 CATAAAATTTTGGTTACATTTTTAACCAACATT-TTCCATTATATCGACCGTTACTTGGT 364
|||||| | |||| | || || || | || ||| | || | ||||||||||| |
Sbjct 570 CATAAAGTAATGGTCAGATGGCTATCCCGC-TTCTTCTACTACCTTGACCGTTACTTCAT 628
Query 365 TCCTCGGACTAAT-A-TTCCATCACTAG-ATGAAGTTGGATTGACATGCTTCCTTGACCT 421
| |||||| || | ||||| |||| | |||||||||| |||||||||||| ||||||
Sbjct 629 TGCTCGGA--GATCACTTCCACCACT-GAATGAAGTTGGCCTGACATGCTTCCGTGACCT 685
Query 422 GGTTTATTCTGAGATGCAATCCATGGCCACAA-AAGCTGTAGTAGCACTTATTCATAAAG 480
||||||| |||| | || || | || || || |||||||| |||| ||| || ||||||
Sbjct 686 GGTTTATAATGAGCTACATTCTAAGGTCA-AACAAGCTGTAATAGCTCTTGTTGATAAAG 744
Query 481 AACGTGAGGGCGAAG-AGATTGATAGGGCACTAG-TGAAGAACGTATTAGATGTCTATGT 538
|||| ||||||| || ||||||||||||| || | |||| |||||||||||| |||||||
Sbjct 745 AACGGGAGGGCG-AGCAGATTGATAGGGCCCT-GCTGAAAAACGTATTAGATATCTATGT 802
Query 539 GGATAATGGGAT-GGGAACCACT-GAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTT 596
|| | ||| || ||| | | | || | |||||||| |||||||||||||||||||||
Sbjct 803 AGAGATTGGAATGGGGCA-GA-TGGAGAGGTATGAAGAAGATTTTGAAAGCTTCATGCTT 860
Query 597 CAAGATACTGCTTCTTACTATTCTCGCAAGGCGTCAAGGTGGAT-CGAGGAGGATTCTTG 655
||||||||| |||| || |||||||||||||| ||||| ||||| | |||| ||||||||
Sbjct 861 CAAGATACTTCTTCGTATTATTCTCGCAAGGCATCAAGCTGGATTC-AGGAAGATTCTTG 919
Query 656 TCCTGATTACATGATAAAGGT-TGAGGAGTGTCTAAAGAGGGAGAGGGAGAGAGTCACTC 714
|||||||||||| | ||| | ||| || |||||||||| ||||||||||||||| |||
Sbjct 920 CCCTGATTACATGTTGAAG-TCTGAAGAATGTCTAAAGAAGGAGAGGGAGAGAGTGGCTC 978
Query 715 ACTATCTCCATTCAAGCACTGAACCCAAA-CTAGTTGAGAAAGTACAAAATCAATTGTTG 773
|||| || || ||||||| ||| || ||| || ||||||||||||||| || ||||| ||
Sbjct 979 ACTACCTACACTCAAGCAGTGAGCC-AAAGCTGGTTGAGAAAGTACAACATGAATTGCTG 1037
Query 774 GTAATGGTTGCAAAAAACCGTCTAGAAAATGAGCATTCAGGGTGCTGTGCATTGCTAAGA 833
|| || |||||| | | ||||||||| || || ||||||||| ||||||||||||||
Sbjct 1038 GTTGTGTTTGCAAGTCAGCTTCTAGAAAAAGAACACTCAGGGTGCCGTGCATTGCTAAGA 1097
Query 834 GATGACAAGAAGAATGATCTCTCTAGGATGTACAGTCTTTATCATCCAATCCCT-CATAG 892
||||||||| | |||||||||| ||||||||||| ||||| ||| ||| | | ||
Sbjct 1098 GATGACAAGGTGGATGATCTCTCCAGGATGTACAGGCTTTACCATAAAATTT-TGCG-AG 1155
Query 893 G-TTAGAACGTATTGCAGACTTATTCAAAAAGCATATTACTGAAGAGGGGAATGCCCTTA 951
| || |||| | ||||| || | || || ||||| | || | |||||| || || |||
Sbjct 1156 GCTTGGAACCTGTTGCAAACATCTTTAAGCAGCATGTCACAGCAGAGGGTAACGCTCTTG 1215
Query 952 TCAAACAAGCTGACGACGCAACTACTAATCA 982
|| |||| || || ||| | ||||||||||
Sbjct 1216 TCCAACAGGCCGAAGACACGGCTACTAATCA 1246
> AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964-22006172
FORWARD LENGTH=768
Length=768
Score = 486 bits (263), Expect = 2e-136
Identities = 593/746 (79%), Gaps = 48/746 (6%)
Strand=Plus/Plus
Query 28 TTAAATTTGAGGAAGGATGGTCCTCCTTGCAGA-AAGGTATTACCGAAG-TGATAAGGAT 85
|||||||||||| || ||||||| | | || | ||||| ||||| ||| ||||||| ||
Sbjct 20 TTAAATTTGAGGTAGAATGGTCCAACATACA-ACAAGGTTTTACC-AAGCTGATAAGAAT 77
Query 86 CATAGAAGAAGAGCCGGAACCAGCATTTAAACCTCAGCTAGGTGTCA--AT-CTTTACAC 142
||||||| |||| | |||||||||||| || |||| | | | | || | | ||
Sbjct 78 GATAGAAGGAGAGTCTGAACCAGCATTT-AA--TCAGGAAATTATGATGATGATGCATAC 134
Query 143 GAC-AATCTA-CGATATGTGCACCCAAAAACCAGATTACTCACATCAGCTTTATGAGAAG 200
| | | | || || ||| ||| || || ||| || | || ||||||||||| |||
Sbjct 135 GGCTACT-TACCG-TATATGC-GCC---TACAAGA--ACCCTCAACAGCTTTATGATAAG 186
Query 201 TATCTTCAAGTAATTGAAG-ATTATACTATCCAAACGGTGTTGCCTTCTTTAAGGGAGAA 259
|||| | || |||||| || ||||| | ||||||||||||||||| ||||||||||| ||
Sbjct 187 TATCGTGAATTAATTG-AGAATTATGCAATCCAAACGGTGTTGCCATCTTTAAGGGAAAA 245
Query 260 GCATGATGAACATATGCTAATAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTTTGGT 319
|||||||||| ||||||| |||||||| ||||||||||||| ||||||| |||||||
Sbjct 246 GCATGATGAATGTATGCTACGAGAGCTTGCTAAGAGGTGGAATGCCCATAAACTTTTGGT 305
Query 320 TACATT-TTTAAC-CAACATT-TTCCATTATATCGACCG-TTACTTGGTTCCTCGGACTA 375
|| ||| |||| | || || || ||| || || || || ||| || || | |
Sbjct 306 TAGATTATTTAGCAGAAGGTTGGTCTATT-TA--GA-CGATTCCTTTCTT--TCTAAAAA 359
Query 376 A--TATTCCATCACTAGA-TGAAGTTGGATTGACA-TGCTTCCTTGACCTGGTTTATTC- 430
| |||||||||| || |||||||| |||| | ||||||| |||| |||||| ||
Sbjct 360 AGGCCTTCCATCACT-GAGGGAAGTTGGCTTGA-ATTGCTTCCGCGACCAGGTTTA-TCG 416
Query 431 TGAGATGCAATCCATGGCCACAAAAGCTGTAGTAGCACTTATTCATAAAGAACGTGAGGG 490
||| ||||| ||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct 417 TGAAATGCAGTCCATGGCCGCAGAAGCTATATTAGCACTTATTCATAAAGAACGTGAGGG 476
Query 491 CGAAGAGATTGATAGGGCACTAGTGAAG-AACGTATTAGATGTCTATGTGGATAATGGGA 549
||| | |||||||| | ||| ||| || |||||| ||||||||| ||| || |||||||
Sbjct 477 TGAACAAATTGATAGAGAACTTGTG-AGAAACGTAATAGATGTCTTTGTTGAGAATGGGA 535
Query 550 TGGGAACCACT-GAAAAATATGAAGAGGATTTTGAAA-GCTTCATGCTTCAAGATACTGC 607
|||||| | || |||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 536 TGGGAA-CTCTAAAAAAATATGAAGAGGATTTTGAAAGGC-TCATGCTTCAAGATACTGC 593
Query 608 TTCTTACTATTCTCGCAAGGCGTCAAGGTGGATCGAGGAGGATTCTTGTCCTGATTACAT 667
||||||||||||| ||||||| |||||||||||| | ||||| ||||||| ||||||||
Sbjct 594 TTCTTACTATTCTAGCAAGGCATCAAGGTGGATCCAAGAGGAGTCTTGTCTTGATTACAC 653
Query 668 GATAAAGGTTGAGGAGTGTCTA-AAGAGGGAGAGGGAGAGAGTCACTCACTATCTCCATT 726
| ||||| | | ||||| || || |||||||||||||||||||||||||| || |||
Sbjct 654 GCTAAAGCCTCAACAGTGTTTACAA-AGGGAGAGGGAGAGAGTCACTCACTACCTTCATC 712
Query 727 CAAGCACTGAACCCAAACTAGTTGAG 752
||| |||||||||||||||| |||||
Sbjct 713 CAACCACTGAACCCAAACTATTTGAG 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56325011490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5