BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947975
Length=466
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38650.1 | Symbols: | Proteasome maturation factor UMP1 | c... 673 0.0
AT1G67250.1 | Symbols: | Proteasome maturation factor UMP1 | c... 405 2e-112
AT1G62920.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Proteasom... 145 4e-34
> AT5G38650.1 | Symbols: | Proteasome maturation factor UMP1 |
chr5:15470961-15472815 REVERSE LENGTH=789
Length=789
Score = 673 bits (364), Expect = 0.0
Identities = 413/437 (95%), Gaps = 2/437 (0%)
Strand=Plus/Plus
Query 11 AAGAGGAGAAATGGATTCGGAGAAGAAGATAGCTCATGAGATCGGAGGTATGAAGAACGA 70
||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 107 AAGAGGAGAGATGGAGTCGCAGAAGAAGATAGCTCATGAGATCGGAGGTATGAAGAACGA 166
Query 71 TGCTCTTCGCTTTGGTCTTCACGGTGTTAAGAGCGATATCATTGGATCTCACCCTCTCGA 130
|||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||||||
Sbjct 167 TGCTCTTCGCTTTGGTCTTCACGGCGTTAAGAGCGATATCCTTAGATCTCATCCTCTCGA 226
Query 131 ATCGGCCTACGAATCTGGAAAGAAATCACAAGAAGAAATGAAGAGGAAAGTGATTACGCA 190
| |||| ||||||||||| ||| |||||||||||||||||||||||| |||||| |||||
Sbjct 227 AACGGCTTACGAATCTGGGAAGCAATCACAAGAAGAAATGAAGAGGAGAGTGATCACGCA 286
Query 191 TACTTATGGAGCTGCTCTTCCTTTGAAGATGGATCTTGATAGACAAATCCTTTCTAGGTT 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 287 TACTTATGGAGCTGCTCTTCCTTTGAAGATGGATCTTGATAGACAAATCCTTTCTCGGTT 346
Query 251 TCAGAGACCTCCTGGACCAATTGCTTCATCAATGCTTGGCCTTGAAGTCTACACAGGAGC 310
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 347 TCAGAGACCTCCTGGACCAATTCCTTCATCAATGCTTGGCCTTGAAGTCTACACAGGAGC 406
Query 311 TATAGATGATTTTGGTTTTGAGGATTACTTGAATGATCCCCGTGAATCCGAGACACTCAA 370
| ||||| ||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 407 TCTAGATAATTTTGGTTTTGAGGATTACTTGAATGATCCTCGCGAATCCGAGACGCTGAA 466
Query 371 ACCAGTAGACTTTCACCACGGAATGGAAGTTCGGCTTGGTCTCTCCAAAGGCCCAG-TTC 429
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 467 ACCAGTAGACTTTCACCACGGGATGGAAGTTCGGCTTGGTCTCTCCAAAGGCCCAGCTTC 526
Query 430 CCCCAAGTTTCATGTAG 446
||| |||||||||||||
Sbjct 527 CCC-AAGTTTCATGTAG 542
> AT1G67250.1 | Symbols: | Proteasome maturation factor UMP1 |
chr1:25163642-25165056 REVERSE LENGTH=681
Length=681
Score = 405 bits (219), Expect = 2e-112
Identities = 363/432 (84%), Gaps = 12/432 (3%)
Strand=Plus/Plus
Query 20 AATGGATTCGGAGAAGAAGATAGCTCATGAGATCGGAGGTATGAAGAACGATGCTCTTCG 79
|||||| || ||||| |||||||||||||||||||| ||| | || ||||| ||||||||
Sbjct 89 AATGGAGTCTGAGAAAAAGATAGCTCATGAGATCGGTGGTGTCAAAAACGACGCTCTTCG 148
Query 80 CTTTGGTCTTCACGGTGTTAAGAGCGATATCATTGGATCTCACCCTCTCGAATCGGCCTA 139
|||||||||||||| ||||||||| | ||||| ||||||||||| ||||||||| | ||
Sbjct 149 ATTTGGTCTTCACGGCGTTAAGAGCAACATCATCGGATCTCACCCACTCGAATCGTCATA 208
Query 140 CGAATCTGGAAAGAAATC-ACAAGAAGAAATGAAGAGGAAAGTGATTACGCATACTTA-T 197
|||||||| ||||||||| | |||| | ||||||||| || ||| ||||| | ||
Sbjct 209 CGAATCTGAAAAGAAATCGA-AAGAGGCGTTGAAGAGGACGGTCATTGCGCATGCCTACG 267
Query 198 GGAGCTGCTCTTCCTTTGAAGATGGATCTTGATAGACAAATCCTTTCTAGGTTTCAGAGA 257
||| |||| ||||| |||||||||||| | ||||| ||||| || || ||||||||||||
Sbjct 268 GGA-CTGCACTTCCGTTGAAGATGGATATGGATAGGCAAATTCTCTCAAGGTTTCAGAGA 326
Query 258 CCTCCTGGACCAATTGCTTCATCAATGCTTGGCCTT-GAAGTCTACACAGGAGCTATAGA 316
||||||||||||||| | || || ||||| || || ||||||||||| |||||| | ||
Sbjct 327 CCTCCTGGACCAATTCCGTCGTCGATGCTCGG-TTTAGAAGTCTACACGGGAGCTGTGGA 385
Query 317 TGATTTTGGTTTTGAGGATTACTTGAATGATCCCCGTGAATCCGAGACACTCAAACCAGT 376
||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||| || ||
Sbjct 386 TGACTTTGGTTTTGAGGATTACTTGAATGATCCTCGTGATTCCGAGACATTCAAGCCGGT 445
Query 377 AGACTTTCACCACGGAATGGAAGTTCGGCTTGGTC-TCTCCAAAGGC-CC-AGTTCCCCC 433
|||||| |||||||| ||||||||||| ||||| | |||| ||||| || | || |||
Sbjct 446 AGACTTCCACCACGGGATGGAAGTTCGTCTTGG-CATCTC-AAAGGGACCGATTTACCC- 502
Query 434 AAGTTTCATGTA 445
||||||||||||
Sbjct 503 AAGTTTCATGTA 514
> AT1G62920.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Proteasome
maturation factor UMP1 (InterPro:IPR008012); BEST Arabidopsis
thaliana protein match is: Proteasome maturation factor
UMP1 (TAIR:AT1G67250.1); Has 70 Blast hits to 70 proteins
in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr1:23304313-23306374 FORWARD LENGTH=783
Length=783
Score = 145 bits (78), Expect = 4e-34
Identities = 177/221 (80%), Gaps = 22/221 (10%)
Strand=Plus/Plus
Query 255 AGACCTCCTGGACCAATTGCTTCATCAATGCTTGGCCTTGAAGTCTACACAGGAGCTATA 314
||||| |||| |||||| | || | ||||||| |||||||||||||||||||||||||
Sbjct 133 AGACCAACTGGCCCAATTCCCTCGTTGATGCTTGACCTTGAAGTCTACACAGGAGCTATA 192
Query 315 GATGATTTTGGTTTTGAGGATTACTTGAATG-ATC--C-CCGT-GAATCC--GAGA--C- 364
|||||||||| |||||||||||||||||||| ||| | ||| || ||| |||| |
Sbjct 193 GATGATTTTGATTTTGAGGATTACTTGAATGTATCTACTCCGCAGA-TCCTCGAGAATCC 251
Query 365 A-----CTCAAACCAGTAGACTTTCACCACG--GA-ATGGAAGTTCGGCTTGGTCTCTCC 416
| ||||||||||| ||||| |||||| | ||||||||| || || ||||||||
Sbjct 252 AAGATGCTCAAACCAGTTGACTTCCACCACCACGTCATGGAAGTTGGGGTTAGTCTCTCC 311
Query 417 AAAGGCCCAG-TTCCCCCAAGTTTCATGTAGGGTCAAAACA 456
|||||||||| || || ||||| | |||||| ||||||||
Sbjct 312 AAAGGCCCAGCTTAACC-AAGTTCCTTGTAGG-TCAAAACA 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22153258827
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5