BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947977
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38630.1 | Symbols: ACYB-1, CYB-1 | cytochrome B561-1 | chr5... 1201 0.0
> AT5G38630.1 | Symbols: ACYB-1, CYB-1 | cytochrome B561-1 | chr5:15465992-15468185
FORWARD LENGTH=1516
Length=1516
Score = 1201 bits (650), Expect = 0.0
Identities = 708/736 (96%), Gaps = 3/736 (0%)
Strand=Plus/Plus
Query 1 CTCTCA-TTTCTGGGCATAAG-ATGGTGGTTCCGGTGCTGGGTGGATTCCCGATCTTCAT 58
||| || ||||||||| | || |||| ||||||||||||||||||||| |||||||||||
Sbjct 129 CTCGCATTTTCTGGGC-TTAGTATGGCGGTTCCGGTGCTGGGTGGATTTCCGATCTTCAT 187
Query 59 GGTAGTGAGAGTTTTGGGTTTCATCATCGCGGCTTTGGTTTTGACATGGACTGTTCATTA 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GGTAGTGAGAGTTTTGGGTTTCATCATCGCGGCTTTGGTTTTGACATGGACTGTTCATTA 247
Query 119 CAGAGGAGGCTTAGCTCTTTCTTCTGATAACAAAGATCACATCTTTAATGTCCATCCAGT 178
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 248 CAGAGGAGGCTTAGCTCTTTCTTCTGATAACAAAGATCACATCTTTAATGTTCATCCAGT 307
Query 179 GATGATGGTGATTGGACTCATTCTCTTCAATGGAGAAGCAATGTTAGCATATAAGTCAGT 238
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 308 GATGATGGTGATTGGACTCATACTCTTCAATGGAGAAGCTATGTTAGCATATAAGTCAGT 367
Query 239 TCAAGGTACAAAGAACTTGAAGAAATTGGTTCATCTTACACTACAACTCACAGCTTTTAT 298
||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct 368 TCAAGGTACAAAGAACTTGAAAAAACTGGTTCATCTTACACTACAACTCACAGCATTTAT 427
Query 299 TCTAAGCCTGATCGGAGTATGGGCGGCTCTCAAGTTCCATATTGACAAAGGGATCGAAAA 358
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 428 TCTAAGCCTGATCGGAGTGTGGGCTGCTCTCAAGTTCCATATTGACAAAGGGATCGAAAA 487
Query 359 TTTCTACAGTCTCCATTCGTGGCTCGGCCTTGCTTGCCTCTTTCTCTTTGCATTCCAGTG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TTTCTACAGTCTCCATTCGTGGCTCGGCCTTGCTTGCCTCTTTCTCTTTGCATTCCAGTG 547
Query 419 GGCTGCAGGGTTTGTGACGTATTGGTACCCGGGTGGTTCAAGAAACAGCCGAGCCAGTTT 478
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 548 GGCTGCAGGGTTTGTGACTTATTGGTACCCGGGTGGTTCAAGAAACAGCAGAGCCAGTTT 607
Query 479 GATGCCATGGCATGTATTCTTAGGAATTTACATATATGCATTGGCGTTAGTGACTGCAAC 538
||||||||||||||| |||||||| |||| |||||||||||||||||| |||||||||||
Sbjct 608 GATGCCATGGCATGTGTTCTTAGGGATTTCCATATATGCATTGGCGTTGGTGACTGCAAC 667
Query 539 CACAGGGATACTTGAGAAGGTGACGTTCCTGCAAGTGAATCAGGTGATAACTCGGTATTC 598
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 668 CACAGGGATACTTGAGAAGGTGACGTTCCTGCAAGTGAATCAAGTGATAACTCGGTATTC 727
Query 599 CACAGAGGCAATGTTAGTCAACACAATGGGCGTTCTAATTCTTATTCTTGGCGGTTTTGT 658
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 728 CACAGAGGCAATGTTAGTCAACACAATGGGCGTTCTAATCCTTATTCTTGGCGGTTTCGT 787
Query 659 GATACTCGGTGTGGTTACTCCGGTCAATGGCAAGGATCATGTTCTCACACAATAGAGTAA 718
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 788 GATACTCGGTGTGGTTACTCCGGTCAGTGGCAAGGATCAAGTTCTCACACAATAGAGTAA 847
Query 719 AACCTCGAATAGATCT 734
| ||||||| ||||||
Sbjct 848 ACCCTCGAAAAGATCT 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35616010223
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5