BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947978
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38610.1 | Symbols: | Plant invertase/pectin methylesterase... 826 0.0
> AT5G38610.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:15460691-15461459 REVERSE
LENGTH=769
Length=769
Score = 826 bits (447), Expect = 0.0
Identities = 570/628 (91%), Gaps = 13/628 (2%)
Strand=Plus/Plus
Query 7 TAACTaaaaaaaCAATGAAGCTCTCTCAAGTTTTCTACATTATCTTCTTATTCTTCCTTG 66
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2 TAACTAGAAAAACAATGAAGCTCTCTCAAGTCTTCTACATTATCTTCTTATTCTTCCTTG 61
Query 67 TCTCACAAGTAAACTCAACGTCCGATATGATCGAACAAACCTGCAAATCTTGCGCAGCGA 126
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 62 TCTCACAAGTAAAGTCAACGTCCGATATGATCGACCAAACCTGCAAATCTTGCGCAGCCA 121
Query 127 AATCCACGATCTTCAATTACAACTTCTGTGTCTCCTCTCTCAACAACTCACCAATCGATC 186
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 122 AATCCACGATCTTCGATTACAACTTCTGTGTCTCCTCTCTCAACAACTCTCCAATAGCTC 181
Query 187 TTCCTTCTCCGACCAATCTTTCTTCTCTTGCCCTAGTTCCAATGCTTCAAGCTCTCGACA 246
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 182 TTCCTTCTCCGACCAATCTTTCTTCTCTTGCCCTTGTTCCAATGCTCCAAGCTCTCGACA 241
Query 247 ACGCCACTGCGACCGCTACCACCATTCAACAGCTTCTGATAAGTGAGGACGACGGTGGTT 306
||||||| || || ||| ||||||||||||||||||| ||||| || ||||||||| |||
Sbjct 242 ACGCCACCGCAACAGCTTCCACCATTCAACAGCTTCTTATAAGCGACGACGACGGTAGTT 301
Query 307 TCCGCGGTGCTTGCCTTCGTGACTGCCTTGAGCTTTACGAGGACGCTG-CGGATAGATTA 365
||||| |||||||||| ||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 302 TCCGCAGTGCTTGCCTCCGTGACTGCCTCGAGCTTTACGAGGACGC-GACGGATAGATTG 360
Query 366 GAGGAGGCAGTGAGAGTTTTTACTACAAGGAAAGAGTTAGGGACGGTGAATGTGATGGTT 425
|||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct 361 GAGGAGGCAGTGAGAGTTTTTATTACAAGGAAAGAGTTAGGTACGGTTAATGTGATGGTA 420
Query 426 ACCACCGCCATGGAATCCGCCGTGACGTGTGAGGATGGGTTTAGGGATAGAGA--A-G-- 480
| | |||||||||||||||||||||| |||||| |||| || ||||| ||||| | |
Sbjct 421 AGCGCCGCCATGGAATCCGCCGTGACTTGTGAGAATGGATTCAGGGAAAGAGACGACGGT 480
Query 481 -ACGGTGGTGGTGG---TGCGATGACGTGGACATCTCCAATTGGT-AGTGAGAATTACAA 535
||||||||||||| || || ||||||||| ||||| |||||| | ||||||| ||||
Sbjct 481 GACGGTGGTGGTGGAGGTGTGACGACGTGGACGTCTCCTATTGGTGA-TGAGAATCACAA 539
Query 536 GTTGTTTAAATTGGGTCAGATTGCTCTTTGTATAATCAATATGCTCTCTTCTTCTGTCAC 595
|||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 ATTGTTTGAGTTTGGTCAGATTGCTCTTTGTATATTCAATATGCTCTCTTCTTCTGTCAC 599
Query 596 CTCTCTATCTTTCTAAATCGTTTTCAAT 623
|||||||||||||||||||||||||||
Sbjct 600 ATCTCTATCTTTCTAAATCGTTTTCAAT 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5