BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947981
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26680.1 | Symbols: | transcriptional factor B3 family prot... 547 4e-155
> AT1G26680.1 | Symbols: | transcriptional factor B3 family protein
| chr1:9219463-9223649 FORWARD LENGTH=3308
Length=3308
Score = 547 bits (296), Expect = 4e-155
Identities = 368/403 (91%), Gaps = 4/403 (1%)
Strand=Plus/Plus
Query 8 GAGGTGTTCAACAATGGCGGATCAATCTCTTCTACACTCTCCGATCAAACCACATTTC-T 66
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 77 GAGGTGCTCAACAATGGCGGATCAATCTCTTCTACACTCTCCGATCAACCCACATTTCTT 136
Query 67 TCAAGCCTCTTCTTAAAGGCTTTCGCACTCACCTCAACATTCCTGTTGCTTTCTTCTCGA 126
|| ||||| |||||| || | |||||||||||||||||||||||| |||||||||||||
Sbjct 137 TC-AGCCTATTCTTACAGAATCTCGCACTCACCTCAACATTCCTGTAGCTTTCTTCTCGA 195
Query 127 AGCATGTTGAAGGAAAAAACGATCAAAACAAGACTGTGAAC-CTGAGATCAGACGCGTCA 185
||||||||||||||| |||| | ||||||||||||||| || || ||||||||||||||
Sbjct 196 AGCATGTTGAAGGAAGAAACAACCAAAACAAGACTGTG-ACGCTAAGATCAGACGCGTCG 254
Query 186 GAGAAAACTTGGTTAGTGAAGATGGACGGTTTGAATTTAACCGACGGGTGGGAAGATTTT 245
|| ||||||||||||||||||||||||||| | || |||||||||| ||||||||||||
Sbjct 255 GATAAAACTTGGTTAGTGAAGATGGACGGTCTAAAACTAACCGACGGATGGGAAGATTTT 314
Query 246 GCCTTTTCACATGATCTCCGAATTGGTGACATTGTCGTTTTCAGACATGAAGGAGAAATG 305
|||||| |||||||||| |||| ||||||||| ||||||||||||| |||||||||||||
Sbjct 315 GCCTTTGCACATGATCTTCGAACTGGTGACATCGTCGTTTTCAGACTTGAAGGAGAAATG 374
Query 306 GTGTTTCATGTCACAGCTTTAGGACCAAGTTGTTGTGAGATTCAATATTATACATCATCT 365
||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 375 GTGTTTCATGTCACAGCTTTAGGACCAAGCTGTTGCGAGATTCAATATCATACATCATCT 434
Query 366 CATAACATCAATGATGATGATCGTAATGATCAGACCAATATTG 408
|| || |||||||||||||||||||||||||||| ||| ||||
Sbjct 435 CACAATATCAATGATGATGATCGTAATGATCAGATCAACATTG 477
Score = 165 bits (89), Expect = 4e-40
Identities = 123/139 (88%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 437 CGCAAAAGCTAAACCAAAACAAAGATCACAAT-CAGATTCTTCATCAGACCATTCTTGTT 495
|||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||
Sbjct 833 CGCAAAAGCTAAACCAAAACAAAGATCA-GTTGCAGAATATTCATCAGACCATTCTTGTT 891
Query 496 TTGAGGGATCTGTCAGC-CCTTCAAGCCCAAGAAATAATCAACTGTTTCTTCCAAGGAAC 554
||||||||||||||| | |||||||||| ||||||| ||| ||||| ||||||||||| |
Sbjct 892 TTGAGGGATCTGTCA-CTCCTTCAAGCCTAAGAAATGATCTACTGTATCTTCCAAGGAGC 950
Query 555 TTCGTGAGCTCAAATAGTC 573
|| |||| ||||||| |||
Sbjct 951 TTTGTGAACTCAAATCGTC 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5