BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947982

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G26680.1 | Symbols:  | transcriptional factor B3 family prot...   542    2e-153


> AT1G26680.1 | Symbols:  | transcriptional factor B3 family protein 
| chr1:9219463-9223649 FORWARD LENGTH=3308
Length=3308

 Score =  542 bits (293),  Expect = 2e-153
 Identities = 368/404 (91%), Gaps = 6/404 (1%)
 Strand=Plus/Plus

Query  8    GAGGTGTTCAACAATGGCGGATCAATCTCTTCTACACTCTCCGATCAAACCACATTTC-T  66
            |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct  77   GAGGTGCTCAACAATGGCGGATCAATCTCTTCTACACTCTCCGATCAACCCACATTTCTT  136

Query  67   TCAAGCCTCTTCTTGA-AGGCTTTCGCACTCACCTCAACATTCCTGTTGCTTTCTTCTCG  125
            || ||||| ||||| | ||  | |||||||||||||||||||||||| ||||||||||||
Sbjct  137  TC-AGCCTATTCTT-ACAGAATCTCGCACTCACCTCAACATTCCTGTAGCTTTCTTCTCG  194

Query  126  AAGCATGTTGAAGGAAAAAACGATCAAAACAAGACTGTGAAC-CTGAGATCAGACGCGTC  184
            |||||||||||||||| |||| | ||||||||||||||| || || ||||||||||||||
Sbjct  195  AAGCATGTTGAAGGAAGAAACAACCAAAACAAGACTGTG-ACGCTAAGATCAGACGCGTC  253

Query  185  AGAGAAAACTTGGTTAGTGAAGATGGACGGTTTGAATTTAACCGACGGGTGGGAAGATTT  244
             || ||||||||||||||||||||||||||| | ||  |||||||||| |||||||||||
Sbjct  254  GGATAAAACTTGGTTAGTGAAGATGGACGGTCTAAAACTAACCGACGGATGGGAAGATTT  313

Query  245  TGCCTTTTCACATGATCTCCGAATTGGTGACATTGTCGTTTTCAGACATGAAGGAGAAAT  304
            ||||||| |||||||||| |||| ||||||||| ||||||||||||| ||||||||||||
Sbjct  314  TGCCTTTGCACATGATCTTCGAACTGGTGACATCGTCGTTTTCAGACTTGAAGGAGAAAT  373

Query  305  GGTGTTTCATGTCACAGCTTTAGGACCAAGTTGTTGTGAGATTCAATATTATACATCATC  364
            |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct  374  GGTGTTTCATGTCACAGCTTTAGGACCAAGCTGTTGCGAGATTCAATATCATACATCATC  433

Query  365  TCATAACATCAATGATGATGATCGTAATGATCAGACCAATATTG  408
            ||| || |||||||||||||||||||||||||||| ||| ||||
Sbjct  434  TCACAATATCAATGATGATGATCGTAATGATCAGATCAACATTG  477


 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 61/67 (91%), Gaps = 2/67 (3%)
 Strand=Plus/Plus

Query  436  GCGCAAAAGCTAAACCAAAACAAAGATCACAAT-CAGATTCTTCATCAGACCATTCTTGT  494
            |||||||||||||||||||||||||||||   | |||| | |||||||||||||||||||
Sbjct  832  GCGCAAAAGCTAAACCAAAACAAAGATCAGT-TGCAGAATATTCATCAGACCATTCTTGT  890

Query  495  TTTGAGG  501
            |||||||
Sbjct  891  TTTGAGG  897



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25167307647


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5