BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947990
Length=1214
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35780.1 | Symbols: | pseudogene, hypothetical protein, con... 717 0.0
AT5G38500.1 | Symbols: | Domain of unknown function (DUF313) ... 671 0.0
AT5G38490.1 | Symbols: | Domain of unknown function (DUF313) ... 616 2e-175
> AT5G35780.1 | Symbols: | pseudogene, hypothetical protein, contains
Pfam profile PF03754: Domain of unknown function (DUF313)
| chr5:13955413-13956421 FORWARD LENGTH=1009
Length=1009
Score = 717 bits (388), Expect = 0.0
Identities = 547/621 (88%), Gaps = 21/621 (3%)
Strand=Plus/Plus
Query 570 CTAAGTCCGAGAAGACAGAGACGAGAGACCTACCAAACCCTAATTACCATTCTTCTTCTC 629
|||||| | ||||||||||| || | ||||| |||||||||||||||| ||||| |||
Sbjct 402 CTAAGTTGGGGAAGACAGAGAAGAAAAACCTAACAAACCCTAATTACCAATCTTCATCTT 461
Query 630 CATCTTCATGCCTAACGGAGAACAAAAGCCGCAAGAGGCGTGTCGTGCAACAGAGGAAGA 689
| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 462 CGTCTTCATGCCTAACGGAGAACAAAAGCCGCAAGAGGCGTGCCGTGCAGCAGAGGAAGA 521
Query 690 GTGGTAAATTCAAGAAAGCAAAGGTTGCTCCTTTGCTAAGG-TGGTCTACAGAGACGCCT 748
|||||||| |||||||||| | ||||| | |||||| |||| | ||||| |||||||||
Sbjct 522 GTGGTAAACTCAAGAAAGCGAGGGTTGTTTCTTTGCCAAGGAT-GTCTATAGAGACGCCA 580
Query 749 GAGTGGGTTTTCGAGGTGATGAGATATATGAAAGCTGATGCCGAAAACCCGA-GCTTGAT 807
|||||||||||| ||||||||||||| ||||| |||||||| |||| ||||| || ||||
Sbjct 581 GAGTGGGTTTTCCAGGTGATGAGATACATGAACGCTGATGCTGAAACCCCGAGGC-TGAT 639
Query 808 CTTTGTGAGGGCTCTG-ACAAATAGTGATGTCAAAGT-GGGCCAGAGCCGTCTCTTACTC 865
|||| |||| ||||| | ||||||||||||||| | |||| ||||||||||||| ||
Sbjct 640 ATTTGAGAGGACTCTGTTC-AATAGTGATGTCAAA-TCAGGCCTGAGCCGTCTCTTAATC 697
Query 866 CCATTCCAGCAGCTAATCAGAAACGACTTCTTGACGCCTGCAGAGTGTCGAGCCATACag 925
|| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 698 CCTTTCCAGCAGCTAATCAGAAACGACTTCTTGACGCCTGCGGAGTGTAGAGCCATACAG 757
Query 926 aaagacgaagacgaagacgaagacgaagaagacgcgaaTATTGGTGTGGGAACGATTCTT 985
|||||||||||| | ||||||| | | | | |||||||||||||||||||||||||
Sbjct 758 AAAGACGAAGAC--A-ACGAAGATG-A-CA-A---GAATATTGGTGTGGGAACGATTCTT 808
Query 986 GTGAATCAAAGGTCTGAAAA-GTGGGGTTTACGTTTTAAGATATGGGTGATGGAGAAGGA 1044
||||| ||||| ||| |||| ||||||||| ||||| |||||||||| ||||||||||||
Sbjct 809 GTGAACCAAAGATCT-AAAATGTGGGGTTTGCGTTTCAAGATATGGGCGATGGAGAAGGA 867
Query 1045 CTATGGACACGGAACCTTGAATTACGCTTTGAATTGGGGTTGGAACGAAGTTGTCAAGGG 1104
|| |||||||||||| ||||||||| ||||||||||||||||||||| || ||||| ||
Sbjct 868 CTCTGGACACGGAACATTGAATTACATTTTGAATTGGGGTTGGAACGATGTAGTCAAAGG 927
Query 1105 TAACGGCTTAAAAGCCGGCGACAAAATCAGTCTTTGGACTTTCAGGTGCCGTGGAGTCCT 1164
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 928 TAACGGCTTAAAGGCTGGCGACAATATCAGTCTTTGGACTTTCAGGTGCCGTGGAGTCCT 987
Query 1165 CTGCTTTGCC-CTTGAGACAT 1184
||||||| || ||||||||||
Sbjct 988 CTGCTTT-CCTCTTGAGACAT 1007
Score = 187 bits (101), Expect = 2e-46
Identities = 272/347 (78%), Gaps = 42/347 (12%)
Strand=Plus/Plus
Query 45 ATCTCACGGATTCAGGGAAGGATATGTGGTCG-GATCTGTGTTTGCTGGTGGATACG--G 101
|||||||||||||||||||||||||||| ||| | ||| ||||| |||| || | | |
Sbjct 14 ATCTCACGGATTCAGGGAAGGATATGTGTTCGAG-TCTTTGTTTACTGGCCGA-A-GTTG 70
Query 102 CAGTTATGGTTGAGGAAGAAGAACAACGTCATCGTCTTCTTGCAGAATCCAAGTGCCATA 161
| |||||||||| ||||||||||||| | ||||| |||| | | || |
Sbjct 71 CGGTTATGGTTGCGGAAGAAGAACAAT-T--TCGTCGTCTT-C----T--AA-----A-- 113
Query 162 AGACTGTCTCTGAAGAAGAAGATAGCCAGAAGAGATTCTTCTATCTTTTCCCGAGGAAGA 221
|||||||||| |||||||||||||| | ||||| |||||||||| ||||||||| || |
Sbjct 114 -GACTGTCTCTAAAGAAGAAGATAGCGACAAGAGTTTCTTCTATCGTTTCCCGAG-AA-A 170
Query 222 AA--AGGTCTTCTTTGGTAAAGATAAGTTACACACAACAAAACCCTAATGGGGTTTCTAC 279
|| || || |||||||| |||| ||| ||||| || ||||||||||| |||| ||||||
Sbjct 171 AATCAGATCGTCTTTGGTGAAGAGAAGATACACGCAGCAAAACCCTAACGGGGCTTCTAC 230
Query 280 GTCTTCTTCTTCATCGCTTCTCGATCTTAACCTAACC-CTCACTGATTACGAGACGAAAA 338
| | |||| | || |||||||||| ||||||| | | |||||||||||| |||||
Sbjct 231 -T-T-CTTC---AGCGGTTCTCGATCTGAACCTAATCAC-CACTGATTACGACTTGAAAA 283
Query 339 ACGCA-CAAAACCCTAGTTTTGATAAGC--TT--TTGGTGTATGATG 380
| || |||||||||||||||||| ||| || ||||||||| |||
Sbjct 284 CC-CAACAAAACCCTAGTTTTGATGAGCCGTTAGTTGGTGTATAATG 329
> AT5G38500.1 | Symbols: | Domain of unknown function (DUF313)
| chr5:15416018-15417253 REVERSE LENGTH=1236
Length=1236
Score = 671 bits (363), Expect = 0.0
Identities = 774/958 (81%), Gaps = 86/958 (9%)
Strand=Plus/Plus
Query 52 GGATTCAGGGAAGGATATGTGGTCGGA-TCTGTGTTTGCTGGTGGATACGGCAGTTATGG 110
|||||||||||||||||||||||| || |||||||| |||| ||| || | |||||||
Sbjct 3 GGATTCAGGGAAGGATATGTGGTC-GAGGCTGTGTTTACTGGCGGAAACTGTGGTTATGG 61
Query 111 -T--TGAGGAAGAAGAACAACGTCATCGTCTTCTTGC---------AG-A-A-TCCAAGT 155
| ||||||||||||||||||| |||||| ||||| || | | || |||
Sbjct 62 CTGCGGAGGAAGAAGAACAACGTCGTCGTCTACTTGCAGAGAAAAGAGAAGATTCAAAGA 121
Query 156 G-C--CATAAGACTGTCTCTGAAGAAGAAGATAGCCAGAAGAGATTCTTCTATCTTTTCC 212
| | | |||||||||||||||||||| |||||| ||||||||||||| | || | |||
Sbjct 122 GTCAGAAGAAGACTGTCTCTGAAGAAGACGATAGCGAGAAGAGATTCTTATCTCATGTCC 181
Query 213 CGAGGAAGAAAAGGTCTTCTTTGGTAAAGATAAGTTACACACAACAAAACCCTAATGGGG 272
||||||| |||||||| |||||||||||| || ||| || | |||| |||||||| |
Sbjct 182 CGAGGAAAAAAAGGTCGTCTTTGGTAAAG---AG--ACA-AC-A-AAAA-CCTAATGGTG 232
Query 273 TTTCTACGTCTTCTTCTTCATCGCTT-CTCGATCTTAACCTAA-CCCTCACTGATTACGA 330
|||||| |||||||||| |||||| || |||||||||| || ||| || |||||||||
Sbjct 233 TTTCTA---CTTCTTCTTCGTCGCTTCCT-GATCTTAACCAAATCCC-CATTGATTACGA 287
Query 331 GAC-GAAAAACGCACAAAACCCTAGTTTTGA-TAAGCTTTTGGTGTATGATGAAGAAAAA 388
||| | ||| | |||||||||||||||| | | ||| |||||||| |||||||||| ||
Sbjct 288 GACTG-AAACCAAACAAAACCCTAGTTTT-ATTGAGCGTTTGGTGTGTGATGAAGAACAA 345
Query 389 CGTGCAAAGAAAGGTAAATCAAAGATTATATGTgaagaagaagaggaagaggacgaagag 448
|||| |||||||| ||||| | ||||||||| |||||||| ||||||| |||||||||
Sbjct 346 CGTGTGAAGAAAGGCAAATCCAGGATTATATGGGAAGAAGAGGAGGAAGCGGACGAAGAC 405
Query 449 agtgagaagagactcttcgagaagaatctgaagaaATTTGTA--AGACA--C--CAACAA 502
|| ||||||||||| ||||||||||| |||| |||||||||| | ||| | ||||||
Sbjct 406 AGCGAGAAGAGACTTTTCGAGAAGAACCTGATGAAATTTGTAGGACACAGCCAACAACAA 465
Query 503 CAAAACTTTCATAA-TCTCAATGGGGCTTCA---GC-T--TC-TTC----A---TCGTT- 546
||||| ||| | || |||||||||||||||| | | || ||| | |||||
Sbjct 466 CAAAAGTTTGA-AACTCTCAATGGGGCTTCATCTTCTTCATCGTTCTTAAACCTTCGTTG 524
Query 547 CT-TGAATCTTCG---TTGTT--A-T-GAGC-C---TAAGTCCGAGAAGACAGAGACGAG 594
| ||| ||||| || || | | | | | | |||| ||||||||||||||||
Sbjct 525 TTATGAGGCTTCGTTATTCTTGGATTACAACACGGTTGAGTCAGAGAAGACAGAGACGAA 584
Query 595 AGACCTACCAAACCCTAATTACCATTCTTCTTCTCCATCTTCATGCCTAACGGAGAAC-A 653
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 585 AGTTCTACCAAACCCTAATTACCAATCTTCTTCTCCGTCTTCATGCCTAACGGAGAACGA 644
Query 654 -A-AAGCCGCAAGAGGCGTGTCGTGCAACAGAGGAAGAGTGGTAAATTCAAGAAAGCAAA 711
| ||| ||||||||||||| |||| |||||||||||||||||||| ||||||||| |||
Sbjct 645 CACAAGTCGCAAGAGGCGTGCCGTGGAACAGAGGAAGAGTGGTAAAGTCAAGAAAGTAAA 704
Query 712 GGTTGCTCCTTTGCTAAGGTGGTCTACAGAGACGCCTGAGTGGGTTTTCGAGGTGATGAG 771
|||| ||||||||| ||||| |||||||||||||||||||||||||||| | | |||| |
Sbjct 705 GGTTTCTCCTTTGCCAAGGTTGTCTACAGAGACGCCTGAGTGGGTTTTCCAAGCGATGGG 764
Query 772 ATATATGAAAGCTGATGCCGAAAACCCGA-GCTTGATCTTTGTGAGGGCTCTGA-CAAAT 829
| | ||||| |||||||| |||| ||||| ||| |||||||| ||| ||||| |||
Sbjct 765 ACACATGAACGCTGATGCTGAAACCCCGAAGCT-GATCTTTGAAAGGACTCTGTTCAAG- 822
Query 830 AGTGATGTCAAAG-TGGGCCAGAGCCGTCTCTTACTCCCATTCCAGCAGCTAATCAGAAA 888
||||||||||| | || |||||||||||| ||||||||||| |||||||||||||
Sbjct 823 AGTGATGTCAACTCTAA-CCTCAGCCGTCTCTTAATCCCATTCCAGAAGCTAATCAGAAA 881
Query 889 CGACTTCTTGACGCCTGCAG-AGTGTCGAGCCATACagaaagacgaagacgaagacga 945
||||||||||||||| | || ||||||||||||| ||| ||||| ||||| |||||||
Sbjct 882 CGACTTCTTGACGCCAG-AGGAGTGTCGAGCCATGCAGGAAGACAAAGACAAAGACGA 938
Score = 305 bits (165), Expect = 5e-82
Identities = 225/254 (89%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 938 gaagacgaagacgaagaagacgcga-aTATTGGTGTGGGAACGATTCTTGTGAATCAAAG 996
|||||||||||| |||| |||| | ||||||||| |||||||||||||||||| |||||
Sbjct 985 GAAGACGAAGACAAAGACGACG-AAGATATTGGTGCGGGAACGATTCTTGTGAACCAAAG 1043
Query 997 GTCTGAAAA-GTGGGGTTTACGTTTTAAGATATGGGTGATGGAGAAGGACTATGGACACG 1055
| | |||| ||||||||| ||||| |||||||||| |||||||||||||| |||||| |
Sbjct 1044 AT-TTAAAATGTGGGGTTTGCGTTTCAAGATATGGGGGATGGAGAAGGACTCTGGACATG 1102
Query 1056 GAACCTTGAATTACGCTTTGAATTGGGGTTGGAACGAAGTTGTCAAGGGTAACGGCTTAA 1115
|||||||||||||| ||||||||||| ||||| || || ||||| |||||| ||||||
Sbjct 1103 GAACCTTGAATTACATTTTGAATTGGGACTGGAATGATGTCGTCAAAGGTAACAGCTTAA 1162
Query 1116 AAGCCGGCGACAAAATCAGTCTTTGGACTTTCAGGTGCCGTGGAGTCCTCTGCTTTGCCC 1175
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1163 AAGCCGGCGACAATATCGGTCTTTGGACTTTCAGGTGCCGTGGAGTCCTCTGCTTTGCTC 1222
Query 1176 TTGAGACATGGTAG 1189
|||| |||||||||
Sbjct 1223 TTGACACATGGTAG 1236
> AT5G38490.1 | Symbols: | Domain of unknown function (DUF313)
| chr5:15411672-15413132 REVERSE LENGTH=1461
Length=1461
Score = 616 bits (333), Expect = 2e-175
Identities = 579/695 (83%), Gaps = 27/695 (4%)
Strand=Plus/Plus
Query 508 CTTTCATAATCTCAATGGGGCTTC-A--GCTTCTTCATCGTTCTTGAATCTTCGTTGT-T 563
|||| ||||||| ||||| ||||| | ||||||||||| || |||| |||| |||| |
Sbjct 593 CTTTGATAATCTTAATGGAGCTTCTACTTCTTCTTCATCGCTCCTGAACCTTCCTTGTCT 652
Query 564 ATGAGCCTAAGTCCGAGAAGACAGAGACGAGAGACCTACCAAACCCTAATTACCATTCTT 623
||| ||| | | ||||||||| | |||| ||||||||||||||||||| ||||
Sbjct 653 -TGAACCT---T-C-----GACAGAGACAAAAGACGTACCAAACCCTAATTACCAATCTT 702
Query 624 CTTCTCCATCTTCATGCCTAAC-GGAGAACA-AAAGCCGCAAGAGGCGTGTCGTGCAACA 681
| ||||| |||||||||||||| || ||| | ||| |||||||||||||| |||| | ||
Sbjct 703 CGTCTCCGTCTTCATGCCTAACAGG-GAAGACAAA-CCGCAAGAGGCGTGCCGTGGAGCA 760
Query 682 GAGGAAGAGTGGTAAATTCAAGAAAGCAAAGGTTGCTCCTTTGCTAAGGTGGTCTACAGA 741
|||||||||||||||| ||||||||| |||||| ||||||||| ||||| || ||||||
Sbjct 761 GAGGAAGAGTGGTAAAGTCAAGAAAGTTAAGGTTTCTCCTTTGCCAAGGTTGTGTACAGA 820
Query 742 GACGCCTGAGTGGGTTTTCGAGGTGATGAGATATATGAAAGCTGATGCCGAAAACCCGA- 800
|| |||||||||| ||||| | ||||||||||| ||||| |||||||| |||| |||||
Sbjct 821 GATGCCTGAGTGGATTTTCCAAGTGATGAGATACATGAACGCTGATGCTGAAACCCCGAG 880
Query 801 GCTTGATCTTTGTGAGGGCTCTGACAAATAGTGATGTCAAAGT-GGGCCAGAGCCGTCTC 859
|| |||| |||| |||| ||||| || ||||||||| || | || || ||||||
Sbjct 881 GC-TGATATTTGAGAGGACTCTGTTTAAGAGTGATGTC-AACTCAAACCTTAGTCGTCTC 938
Query 860 TTACTCCCATTCCAGCAGCTAATCAGAAACGACTTCTTGACGCCTGCAGAGTGTCGAGCC 919
||| | || |||||| |||||||||||||||| ||| |||| ||||| |||||| ||||
Sbjct 939 TTAATGCCTTTCCAGAAGCTAATCAGAAACGATTTCCTGACTCCTGCGGAGTGTAGAGCT 998
Query 920 ATACagaaagacgaagacgaagacgaagacgaagaagacgcgaaTATTGGTGTGGGAACG 979
|| ||||||||||||||| | | || || ||||| |||| |||||||||||||||||||
Sbjct 999 ATGCAGAAAGACGAAGAC--A-ATGATGAAGAAGACGACGAGAATATTGGTGTGGGAACG 1055
Query 980 ATTCTTGTGAATCAAAGGTCTGAAAAGTGGGGTTTACGTTTTAAGATATGGGTGATGGAG 1039
|||||||||| ||||| | | ||||||||||||| ||||| |||||||||| |||||||
Sbjct 1056 GTTCTTGTGAACCAAAGATTTCAAAAGTGGGGTTTGCGTTTCAAGATATGGGCGATGGAG 1115
Query 1040 AAGGACTATGGACACGGAACCTTGAATTACGCTTTGAATTGGGGTTGGAACGAAGTTGTC 1099
||||||| |||||| ||||| ||||||||| ||||||||||||||||||| || || |||
Sbjct 1116 AAGGACTCTGGACATGGAACATTGAATTACACTTTGAATTGGGGTTGGAATGATGTCGTC 1175
Query 1100 AAGGGTAACGGCTTAAAAGCCGGCGACAAAATCAGTCTTTGGACTTTCAGGTGCCGTGGA 1159
|| ||| | ||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1176 AAAAGTAGCAGCTTAAAAGTCGGCGACAAGATCAGCCTTTGGACTTTCAGGTGCCGTGGA 1235
Query 1160 GTCCTCTGCTTTGCCCTTGAGACATG-GTAGTTCT 1193
|||||||||||||| ||||| ||| | |||| |||
Sbjct 1236 GTCCTCTGCTTTGCACTTGACACA-GAGTAGCTCT 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59638247460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5