BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947994

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18...   348    4e-95


> AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18036116-18040928 
FORWARD LENGTH=3159
Length=3159

 Score =  348 bits (188),  Expect = 4e-95
 Identities = 263/296 (89%), Gaps = 17/296 (6%)
 Strand=Plus/Plus

Query  234   GTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCCT  293
             |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct  1813  GTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCCT  1872

Query  294   CTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAGG  353
             ||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct  1873  CTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAGG  1932

Query  354   ATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTGG  413
             ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1933  ATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTGG  1992

Query  414   ATGTCATTCGTTTCTCCACTCGGAGAG-----T-A--C------C-ATATACCAAGATCT  458
             ||||| ||| |||||||||| ||||||     | |  |      | ||||||| ||||||
Sbjct  1993  ATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATCT  2052

Query  459   TTCATGAAGGAGGG-GAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG  513
             |||||||||| ||| ||||||||||| |||| ||||||||||||||||||| ||||
Sbjct  2053  TTCATGAAGG-GGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG  2107


 Score =  250 bits (135),  Expect = 1e-65
 Identities = 203/234 (87%), Gaps = 12/234 (5%)
 Strand=Plus/Plus

Query  1     GCAAAGGTCTCAAATTTGAGATGTTTAGTGAAGATATTCCTTCCATACTCGACGGTGATT  60
             |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct  1340  GCAAAGGTCTCAAATTTGAGATGTTTAGTGAAAATATTCCTTCCTTACTTGACGGTGATT  1399

Query  61    CCTTGATTCTGGGGGAGCTTTATTACTTAACTAAGGACAAAACAGATTATGCTTGGTATA  120
             | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||     
Sbjct  1400  CTTTGATTCCGGGGGAGCTTTATTACTTAACTAAAGACAAAACAGATTATGCTTG-----  1454

Query  121   CCACAATCATAAAGATTGAAGATGATGACATACCAGACCAGAAAGGTCAGAAGACGATAC  180
             |     | | || |||||| || |||||| | |||||||| ||||||| |||||| ||||
Sbjct  1455  CG----T-A-AA-GATTGACGAAGATGACTTTCCAGACCAAAAAGGTCTGAAGACTATAC  1507

Query  181   TGAGAGTAGCGGGTCTTGGTCACGCATTAATCGTTTACGTTAATGGAGAATACG  234
             ||||||||||| |||||||||||||| | |||||||||||||| ||||| ||||
Sbjct  1508  TGAGAGTAGCGAGTCTTGGTCACGCACTGATCGTTTACGTTAACGGAGAGTACG  1561



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28633463790


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5