BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947997
Length=445
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38440.1 | Symbols: | Plant self-incompatibility protein S1... 595 1e-169
AT5G38435.1 | Symbols: SPH8 | S-protein homologue 8 | chr5:1538... 431 3e-120
AT2G23142.1 | Symbols: | Plant self-incompatibility protein S1... 159 2e-38
> AT5G38440.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr5:15390223-15390624 FORWARD LENGTH=402
Length=402
Score = 595 bits (322), Expect = 1e-169
Identities = 379/406 (93%), Gaps = 5/406 (1%)
Strand=Plus/Plus
Query 21 ATGAATCGTCTCTCTTGTTTTCTACTCGTTATTGGATTGTGTGTAGGATTGAGTAACGCA 80
|||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGAATCGGCTCTCGTGTTTTCTGCTCGTTATTGGATTGTGCATAGGATTGAGTAACGCA 60
Query 81 GATTTCAA-ATGGAATGAGAAAAACTCTGTATACTTCAAGAGTTCCCTTGGTCGAAACAA 139
|||| || |||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 61 AATTT-AATATGGAATGAGAAAAACACTGTATTCTTCAAGAGTTCCCTTGGTCGAAACAA 119
Query 140 TGTCTTGAAGATTCATTGCACATCAAACGACGACAATCTAGGCTTCCATTTTTTGCGCCC 199
||| |||||||||||||||||||| | || ||||||||||| |||||||||||||| ||
Sbjct 120 TGTTTTGAAGATTCATTGCACATC--A-GAAGACAATCTAGGTTTCCATTTTTTGCGTCC 176
Query 200 TGGACAAACCTATGATTTTAGTTTCCATGATAGTGTTGTGAGATCAGAAtttttttGTGA 259
|||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |||||
Sbjct 177 TGGAGAAACCTATGATTTTAGTTTCCATGATAGTATTGTGAGATCAGACTTTTACTGTGA 236
Query 260 TTTATGGCAAGGGCCTAATTTCAAGTTTCATGCATCGTTTATGGCATATGAAGGTAGTGG 319
||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 237 ATTATGGCAAGGGCCTAATTTCAAGTTTCATGCATCATTTATGGCATATCAAGGTGGTGG 296
Query 320 TCTCATAGTTCATTATGGTAAAAAGAACTTTTGGGATGCTAGAGAAGATGGAATCTATTT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTCATAGTTCATTATGGTAAAAAGAACTTTTGGGATGCTAGAGAAGATGGAATCTATTT 356
Query 380 CACTCATGGCAAAGAAATGCCCAAGTTAGAGTATAAGTGGAAATAA 425
||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 CACTCATGGCAAAGAAACGCCCAAGTTAGAGTATAAGTGGAAATAA 402
> AT5G38435.1 | Symbols: SPH8 | S-protein homologue 8 | chr5:15388045-15388656
FORWARD LENGTH=612
Length=612
Score = 431 bits (233), Expect = 3e-120
Identities = 363/425 (85%), Gaps = 12/425 (3%)
Strand=Plus/Plus
Query 19 CAATGAATCGTCTCTCTTGTTTTCTACTCGTTATTGGATTGTGTGTAGGATTGAGTAACG 78
||||| || ||||||| || ||||| ||||| |||||||| | ||||| |||||| | |
Sbjct 34 CAATGCATAGTCTCTCGTGGTTTCTCCTCGTCATTGGATTATCCGTAGGGTTGAGT-A-G 91
Query 79 CAGATTTCAAATGGAATGAGAAAAACTCTGT-ATACTTCAAGAGTTCCCTTGGTCGAAAC 137
| || || |||||||||||||||||||| || ||| | || ||| |||||||| |||
Sbjct 92 CGGA----AAGTGGAATGAGAAAAACTCTGTCAT-CTTTACGAATTCTCTTGGTCGGAAC 146
Query 138 AATGTCTTG-AAGATTCATTGCACATCAAACGACGACAATCTAGGCTTCCATTTTTTGCG 196
|| |||||| ||| | |||||| |||||| || ||||||||||||||||| ||||||||
Sbjct 147 AAAGTCTTGAAAG-TAAATTGCATATCAAATGATGACAATCTAGGCTTCCACTTTTTGCG 205
Query 197 CCCTGGACAAACCTATGATTTTAGTTTCCATGATAGTGTTGTGAGATCAGAAtttttttG 256
|| |||||||||||| |||||||||||||| |||||| || | | ||||||||| | |||
Sbjct 206 CCATGGACAAACCTACGATTTTAGTTTCCACGATAGTCTTTTCAAATCAGAATTCTATTG 265
Query 257 TGATTTATGGCAAGGGCCTAATTTCAAGTTTCATGCATCGTTTATGGCATATGAAGGTAG 316
||| |||||||||| |||||||||||||| |||||| | |||| ||||||||||||| |
Sbjct 266 TGACCTATGGCAAGGCCCTAATTTCAAGTTGCATGCAGCATTTACGGCATATGAAGGTGG 325
Query 317 TGGTCTCATAGTTCATTATGGTAAAAAGAACTTTTGGGATGCTAGAGAAGATGGAATCTA 376
|||| | |||||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 326 TGGTTTGATAGTTCATTATGGTAAAAAGAACTTTTGGGATGTTAGAGATGATGGGATCTA 385
Query 377 TTTCACTCATGGC-AAAGAAATGCCCAAGTTAGAGTATAAGTGGAAATAATAATTAACCA 435
|||||| |||||| ||| ||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 386 TTTCACCCATGGCCAAA-AAATGCCCAAGTTAGAGTATACGTGGAAGTAATAATTAATCA 444
Query 436 CTCAA 440
|||||
Sbjct 445 CTCAA 449
> AT2G23142.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr2:9850176-9850619 FORWARD LENGTH=444
Length=444
Score = 159 bits (86), Expect = 2e-38
Identities = 315/420 (75%), Gaps = 37/420 (9%)
Strand=Plus/Plus
Query 21 ATGAATCGTCTCTCTTGTTTTCTACTCGTTATTGGATTGTGTGTAGGATTGAGTAACGCA 80
|||||| || | |||| |||| | || |||||| ||| |||| |||||||| ||| ||
Sbjct 1 ATGAATTGTTTTTCTTATTTTTTCCTTGTTATTATATTATGTGCAGGATTGAATAATGC- 59
Query 81 GATTTCAAATGGAATGAGAAAAACTCTGT-ATACTTCAAGAGTTCCCTTGGT-CGAAACA 138
| |||| || || |||||||| || || || |||||||| |||||| ||||| |
Sbjct 60 G-----AAATTCAACGAAAAAAACTCCGTAAT-TTTTAAGAGTTCTCTTGGTCCGAAAAA 113
Query 139 A-TGTCTTGAAGATTCATTGCACATC--AA-ACGACGACAATCTAGGCTTCCATTT-TTT 193
| | || | | ||||||||| ||||| || |||||||| | | | | | | ||| |
Sbjct 114 ACT-TC-TCAGGATTCATTGTACATCAGAACACGACGAC-A-C-CGAC-TACGTTTACCT 167
Query 194 GCGCCCTGGACAAACCTATG-ATTTTAGTTTCCATGATAGTGT-TGTGAGATCAGA-Att 250
| | | ||||||||| || | | || ||||| ||||||||||| | ||| | | | |||
Sbjct 168 GAGACATGGACAAACTTACGCA-TTCAGTTTTCATGATAGTGTCT-TGAAAAC-TATATT 224
Query 251 tttttGTGATTTATGGCAAGG--G--CCTA--AT--TT-CAAGTTTCATGCATCG-TTTA 300
| |||||| ||| |||||| | || || || ||| ||| ||||| | ||||
Sbjct 225 TGATTGTGAGTTAAAGCAAGGAAGTAGTTATTATAATTACAACTTTTATGCA-AGATTTA 283
Query 301 TGGCATATGAAGGTAGTGGTCTCATAGTTCATTATGGTAAAAAGAACTTTTGGGATGCTA 360
||||||| ||||| | ||||| |||||||| || |||||||||||||||||||||||||
Sbjct 284 GGGCATATAAAGGTGGAGGTCTGATAGTTCACTACGGTAAAAAGAACTTTTGGGATGCTA 343
Query 361 GAGAAGATGGAATCTATTTCACTCATGGCAAAGAAATGCCCAAGTTAGAGTATAAGTGGA 420
|||||||||| || || ||||| ||||| ||||||| || || ||||||||||| ||||
Sbjct 344 GAGAAGATGGTATTTACTTCACACATGGTAAAGAAACACCTAAATTAGAGTATAAATGGA 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21162722329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5