BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948018
Length=791
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38360.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1051 0.0
> AT5G38360.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:15331711-15333625 REVERSE LENGTH=1282
Length=1282
Score = 1051 bits (569), Expect = 0.0
Identities = 711/777 (92%), Gaps = 20/777 (3%)
Strand=Plus/Plus
Query 24 ATGGCGTCTTCTTCTCTTACTTCATTCCCATGCCTATCCTCGCTGACGATTAA-GCCCAT 82
|||||||||||||| ||| | || |||||||||||||||| || | | || ||||||
Sbjct 73 ATGGCGTCTTCTTCACTTCCCTCGTTCCCATGCCTATCCT-ACT-TC-A-AAATGCCCAT 128
Query 83 GGCAGCTCTCACCAATCCCCCAAGAACGAA-AACTCCATACGAA-CTGAAAAAGGGGCAA 140
||||||||||||||| |||| ||||| || | ||||||| || |||||||||||||||
Sbjct 129 AGCAGCTCTCACCAATTCCCCTAGAAC-AACGATTCCATAC-AACCTGAAAAAGGGGCAA 186
Query 141 AACCGTCTCTTCCACAAGCTTCCCTCTGGTCTAAAAATGGAGGTAATCGAACA-ACGAAG 199
| ||| || || |||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 187 ACCCGCCTTTTGCACAAGCTTCCCTCTGGTCTAAAAATGGAGGTAATCGAGCAGA-GAA- 244
Query 200 AA-GCAAATCCGAAAGAGAGAATCCACCATTGGTGTTTGTACATGGAAGCTATCACGCAG 258
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AATCCAAATCCGAAAGAGAGAATCCACCATTGGTGTTTGTACATGGAAGCTATCACGCAG 304
Query 259 CTTGGTGTTGGGCTGAACATTGGTTACCTTTCTTCTCTTCTTCTGGGTTTGATTCTTATG 318
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CTTGGTGTTGGGCTGAAAATTGGTTACCTTTCTTCTCTTCTTCTGGGTTTGATTCTTATG 364
Query 319 CTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAACCTTTGGGAACAGTTGCTGGAACAC 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAACCTTTGGGAACAGTTGCTGGAACAC 424
Query 379 TTCAGACGCACGCAAGTGATATTGCGGATTTCATTGAATCGAATCTTGGTTCTTCACCTC 438
||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||
Sbjct 425 TTCAGACGCACGCAAGTGATATTGCAGATTTTATAGAATCGAATCTTGGCTCTTCACCTC 484
Query 439 CTGTGCTTATTGGTCATTCTTTTGGAGGACTCATTGTTCAATATTACTTGGCAAATATTG 498
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 CTGTTCTTGTTGGTCATTCTTTTGGAGGACTCATTGTTCAATATTACTTGGCAAATATTG 544
Query 499 TAAACAAGCAGA-CGTTAGGAACGGAAAATGCGTTTCCAGAACTTTCAGGGGTTGTACTT 557
||||||||| | | ||||| |||||||||||||||||||| |||||||||| ||| |
Sbjct 545 TAAACAAGC-GTTCATTAGGTACGGAAAATGCGTTTCCAGAGCTTTCAGGGGCGGTAATG 603
Query 558 GTTTGCTCGGTTCCACCTTCGGGTAATAGCGGCTTAGTTTTACGTTATCTCTTCTCGAAA 617
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||
Sbjct 604 GTTTGCTCGGTTCCACCTTCCGGTAATAGCGGCTTAGTGTTACGTTATCTCTTTTCTAAA 663
Query 618 CCTGTGGCTGCTTTTAAGGTTACTCTCAGTTTAGCTGCTAAAGGTTTTCAGAAATCTATT 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CCTGTGGCTGCTTTTAAGGTTACTCTCAGTTTAGCTGCTAAAGGTTTTCAGAAATCTATT 723
Query 678 CCCCTTTGTCGAGAAACATTCTTCTCTCAAGCTATGGATGATCAACTTTT-AC-CAGGAT 735
|| ||||||||||||||||||||||||||||| ||||||||||||||| | | | ||||
Sbjct 724 CCTCTTTGTCGAGAAACATTCTTCTCTCAAGCCATGGATGATCAACTTGTGAAGC-GGAT 782
Query 736 CTTATGA-TAGAGAGTTCACGGATGCCGCTGTTTGATCTGAGGAAGCTAAACGCATC 791
||||||| | ||||||||||| || ||| |||||||| |||| ||||||||||||||
Sbjct 783 CTTATGAGT-GAGAGTTCACGAATACCGTTGTTTGATTTGAGAAAGCTAAACGCATC 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38479356602
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5