BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948034

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38317.1 | Symbols: LCR58 | low-molecular-weight cysteine-ri...   473    5e-133


> AT5G38317.1 | Symbols: LCR58 | low-molecular-weight cysteine-rich 
58 | chr5:15314060-15315226 FORWARD LENGTH=384
Length=384

 Score =  473 bits (256),  Expect = 5e-133
 Identities = 310/335 (93%), Gaps = 7/335 (2%)
 Strand=Plus/Plus

Query  134  TCT-AGTTGTGAATCAGACAAGAGCA-ATTTCATGCGATGAAAGCT-TAGGCCTTTGCAA  190
            ||| || ||| ||||||||||||||| | ||||||||||||||| | ||||||||||| |
Sbjct  53   TCTCAGGTGTTAATCAGACAAGAGCAGA-TTCATGCGATGAAAG-TCTAGGCCTTTGCGA  110

Query  191  AAAATGTGACGAAAGATGCAAGGCCAAACACGGACCATCATGCATAAGCAAATGTGATGG  250
            || |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||
Sbjct  111  AACATGTGACGAAAGATGCCAGGCCAAACACGGGCCATCGTGCATAAGCAAATGTGACGG  170

Query  251  AGAGGTTGGGATGTTGTCGTGCACATGCACTTACGAGTGTGGACCAACTTTACCCCCCAA  310
            |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct  171  AGAGGTTGGGATGTTGTCGTGCACGTGCACTTACGAGTGTGGACCACCTTTACCCCCCAA  230

Query  311  AAGAAACGTTTGCAGCGGTGGGACTGGTATGTGCAGTGGGAATTGTCC-TGATAAATGTT  369
            | | ||||||||||||||||||||||||||||||||||| || ||||| | |||||||||
Sbjct  231  AGGTAACGTTTGCAGCGGTGGGACTGGTATGTGCAGTGGAAAGTGTCCAT-ATAAATGTT  289

Query  370  GTGATACCAACTGCGCACAAAAGTATAATGGTGGACGTGGATTTTGTAACTCCCTTGGTA  429
            |||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  290  GTGATACCAGTTGCGCACAAAAGTATAATGGTGGACGTGGATTTTGTAACTCCTTTGGTA  349

Query  430  ATTATAATTTGTGCCAATGCGAATACCCTTGCTAA  464
            |||||||||| ||||||||||||||||||||||||
Sbjct  350  ATTATAATTTTTGCCAATGCGAATACCCTTGCTAA  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23107707620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5