BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948035
Length=376
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44428.1 | Symbols: | ECA1 gametogenesis related family pro... 457 4e-128
AT2G25312.1 | Symbols: | ECA1 gametogenesis related family pro... 433 7e-121
AT3G45285.1 | Symbols: | ECA1 gametogenesis related family pro... 422 1e-117
> AT3G44428.1 | Symbols: | ECA1 gametogenesis related family protein
| chr3:16067393-16067725 REVERSE LENGTH=333
Length=333
Score = 457 bits (247), Expect = 4e-128
Identities = 309/338 (91%), Gaps = 7/338 (2%)
Strand=Plus/Plus
Query 21 ATGGGTGAGAACATACAAAGAGTGTGTGCGTCTATCTTAACAGTGATGGTTGTGATGCTA 80
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 ATGGGTGAGAACATACAAAGAGTGTGTGCGTCTATCTTAACAGTGATGGTTGTAATACTA 60
Query 81 TCACTTTCTGAAGATACGAAAGGTAATAATGATTTTGCAATGACTCCAATGTCAGAGA-A 139
||||||||||| ||||||||||||||||||||| || ||| ||||||||||||| | |
Sbjct 61 TCACTTTCTGA---TACGAAAGGTAATAATGATTTGGCTATGGCTCCAATGTCAGA-ACA 116
Query 140 AGGGTTGCTGCCAAATCCAATGTCTTGTGTATCAGACGCAAGAAAAATTCCAGATTGTGT 199
||||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 117 AGGGTTGCTTCCAAATCCATTGTCTTGTGTGGCTGACGCAAGAAAAATTCCAGATTGTGT 176
Query 200 AGAAGCACTGAAACAAGGCAAAT-TGAAAGATATaaaaaaaGAATGTTGCATTATTCTAC 258
||| ||| |||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 177 AGAGGCAGTGAAACAAGGCAT-TGTGAAAGATATAAAACAAGAATGTTGCATTATTCTAC 235
Query 259 TCGGTCTTCCCGAAGATTGTTTTGGAATTTTATTTCCTATGCGTTTCTACTATCGTGTCG 318
||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 236 TCGGTCTTCCCGAAGTTTGTTTTGGGATTTTATTTCCTATGCGTTTCTACTACCGTATTA 295
Query 319 TACTTAAAATTACATGCAAATTAATAGGCATTTTTTAA 356
||||||| || |||||||||||||||||||||||||||
Sbjct 296 TACTTAAGATGACATGCAAATTAATAGGCATTTTTTAA 333
> AT2G25312.1 | Symbols: | ECA1 gametogenesis related family protein
| chr2:10780074-10780409 REVERSE LENGTH=336
Length=336
Score = 433 bits (234), Expect = 7e-121
Identities = 304/338 (90%), Gaps = 4/338 (1%)
Strand=Plus/Plus
Query 21 ATGGGTGAGAACATACAAAGAGTGTGTGCGTCTATCTTAACAGTGATGGTTGTGATGCTA 80
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1 ATGGGTGAGAGCATACAAAGAGTGTGTGCGTCTATCTTAACGGTGATGGTTGTGATGTTA 60
Query 81 TCACTTTCT-GAAGATACGAAAGGTAATAATGATTTTGCAATGACTCCAATGTCAGAGAA 139
|||||| || |||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 61 TCACTT-CTTGAAGATACTAAAGGTAATAATGATTTTGCAATGGCTCCAATTTCAGAGAA 119
Query 140 AGGGTTGCTGCCAAATCCAATGTCTTGTGT-ATCAGACGCAAGAAAAATTCCAGATTGTG 198
|||||||| |||||||||||| ||||||| | ||| ||| ||||||||||||||||||
Sbjct 120 TGGGTTGCTACCAAATCCAATGGCTTGTGTGAA-AGATGCAGGAAAAATTCCAGATTGTG 178
Query 199 TAGAAGCACTGAAACAAGGCAAATTGAAAGATATaaaaaaaGAATGTTGCATTATTCTAC 258
|||| ||| |||||||||| | || |||||||||| |||||| |||||| |||||||||
Sbjct 179 TAGAGGCAATGAAACAAGGTTATTTAAAAGATATAACAAAAGAGTGTTGCTTTATTCTAC 238
Query 259 TCGGTCTTCCCGAAGATTGTTTTGGAATTTTATTTCCTATGCGTTTCTACTATCGTGTCG 318
| |||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||
Sbjct 239 TTAGTCTTCCCGAAGATTGTTTTGGGATTCTATTTCCTATGCGTTTATACTATCGTATCG 298
Query 319 TACTTAAAATTACATGCAAATTAATAGGCATTTTTTAA 356
||||||| |||||||||||||| ||||||||||||||
Sbjct 299 TACTTAAGGTTACATGCAAATTATTAGGCATTTTTTAA 336
> AT3G45285.1 | Symbols: | ECA1 gametogenesis related family protein
| chr3:16614566-16614901 FORWARD LENGTH=336
Length=336
Score = 422 bits (228), Expect = 1e-117
Identities = 301/337 (89%), Gaps = 2/337 (1%)
Strand=Plus/Plus
Query 21 ATGGGTGAGAACATACAAAGAGTGTGTGCGTCTATCTTAACAGTGATGGTTGTGATGCTA 80
||| ||||||| || ||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1 ATGAGTGAGAATATGCAAAGAGTGTGTGTGTCTATCTTAACAGTGATGGTTTTGATGCTA 60
Query 81 TCACTTTCTGAAGATACGAAAGGTAATAATGATTTTGCAATGACTCCAATGTCAGAGAAA 140
||| ||||| ||| ||||||||||||||||||| ||| | |||||||||||||||||
Sbjct 61 TCAATTTCTAAAGTTACGAAAGGTAATAATGATCATGCGCCGGCTCCAATGTCAGAGAAA 120
Query 141 GGGTTGCTGCCAAATCCAATGTCTTGTGTATCAGACGCAAGAAAAATTCCAGATTGTGTA 200
|||||||||||||||||||| || |||||| | |||||||||||||||||||||||||||
Sbjct 121 GGGTTGCTGCCAAATCCAATATCATGTGTAGCGGACGCAAGAAAAATTCCAGATTGTGTA 180
Query 201 GAAGCACTGAAACAAGGCAAATTGAAAGAT-ATaaaaaaaGAATGTTGCATTATTCTACT 259
|| ||| | ||||| ||| | |||||| || ||||||||||||||||| || ||||||||
Sbjct 181 GAGGCAATAAAACAGGGCCATTTGAAA-ATTATAAAAAAAGAATGTTGTATCATTCTACT 239
Query 260 CGGTCTTCCCGAAGATTGTTTTGGAATTTTATTTCCTATGCGTTTCTACTATCGTGTCGT 319
| |||||||||||||||||||||| |||||||||||||| ||||||||||||||| || |
Sbjct 240 CAGTCTTCCCGAAGATTGTTTTGGGATTTTATTTCCTATACGTTTCTACTATCGTATCAT 299
Query 320 ACTTAAAATTACATGCAAATTAATAGGCATTTTTTAA 356
|||||| ||||||||||||||||| ||||| ||||||
Sbjct 300 ACTTAAGATTACATGCAAATTAATTGGCATCTTTTAA 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17694247648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5