BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948042
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38280.1 | Symbols: PR5K | PR5-like receptor kinase | chr5:1... 669 0.0
AT5G38275.1 | Symbols: | pseudogene, similar to SCUTL1, blastp... 331 6e-90
> AT5G38280.1 | Symbols: PR5K | PR5-like receptor kinase | chr5:15293121-15297323
REVERSE LENGTH=2316
Length=2316
Score = 669 bits (362), Expect = 0.0
Identities = 641/773 (83%), Gaps = 30/773 (4%)
Strand=Plus/Plus
Query 8 GTCTTCTTCGAGCCAATGGTTGAAGGG------TTGTCATTGATGTTCCTCCTTGTTTCA 61
||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 100 GTCTTCTACAAGCCAATGGTTGAAGGGTTCTCATTGTCATTGATGTTCCTCCTTGTTTCA 159
Query 62 CTTTTATTCGTCTCACGAGTAACGTCAAGAAACTTTACTATAGAGAACAAATGCGATTAC 121
| ||| || |||||| |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 160 CATTTCTTTGTCTCAGGAGTAATGTCGAGAAACTTTACTATAGAGAACAAATGCGATTAC 219
Query 122 ACTGTCTGGCCGGGAGTTTC-AACC-TCA--AGTACGGTTCCTCTCTCCACCACCGGCTT 177
||||||||||||||| || | |||| | | | | ||||| | ||| |||||| ||||||
Sbjct 220 ACTGTCTGGCCGGGA-TTCCTAACCATGACTACTGCGGTTTCGCTCCCCACCAACGGCTT 278
Query 178 CGAACTCAAGAAAGGAGAGGCGCGTGTCATCAACGCGCCGTCGTCATGGACTGGTCGTTT 237
| ||||||||||| ||| | ||||||||||| | ||| |||||||| | ||||||||
Sbjct 279 CTCCCTCAAGAAAGGGGAGTCACGTGTCATCAATGTGCCACCGTCATGGTCAGGTCGTTT 338
Query 238 CTGGGGTAGGTC-TCTCTGCTCCACCAGCTCAACAGGGAACTTCTCCTGCGCCACCGGAG 296
|||||||| || | ||||||||||||||||||||||||| ||||| || ||||| ||||
Sbjct 339 GTGGGGTAGATCGT-TCTGCTCCACCAGCTCAACAGGGAATTTCTCATGTGCCACGGGAG 397
Query 297 ATTGTGGCTCCGGAAAAATCGAGTGCTCTGGAGGC-GCAGC--G-CCTCCAACGACTCTA 352
| || ||||||||||||||||||||||| | | | | ||| | ||||| ||||| |||
Sbjct 398 ACTGCGGCTCCGGAAAAATCGAGTGCTCCG-ATTCCGGAGCAAGGCCTCCTACGACGCTA 456
Query 353 GCTGAGTTTT-CCCTAAACGGTCCCAACGGTCAAGACTTCTATGATGTAAGCCTCGTGGA 411
||| |||| |||| ||| | || |||||||||||||||| ||||||||| |||||||
Sbjct 457 ATTGA-TTTTACCCTTGACGCTACCGACGGTCAAGACTTCTACGATGTAAGCGTCGTGGA 515
Query 412 CGGTTACAACCTTCCTTTAGTGGTGGTCCCACAACGTCC-GCAGAGTGGCCAGACATGC- 469
|||||||||||||| || || |||||||||||||||| | |||||||| ||||||
Sbjct 516 TGGTTACAACCTTCCGTTGGTTGTGGTCCCACAACGTCTAGG-GAGTGGCCGGACATGTA 574
Query 470 GTCAGCATTGGTTGCGTGGTCAACCTGACCAAGACGTGTCCGTCGGAGCTTCAGGTTATG 529
| || | ||||||| ||||| ||| ||| |||||| ||||||||||||||| | || |||
Sbjct 575 G-CAACGTTGGTTGTGTGGTTAACTTGAACAAGACTTGTCCGTCGGAGCTTAAAGTGATG 633
Query 530 GGAAGCTCCAGCGAGGGAGAGCCAATTGCTTGCATGAACGCTTGTCAGAAATTCAAAACA 589
|||||||| | | ||| | | || ||||||||||||||||||||||||||||||
Sbjct 634 GGAAGCTCTAACAAGGAACATCCCATTGCTTGCATGAACGCTTGTCAGAAATTCGGGTT- 692
Query 590 GC-GGAATTCTGCTGC-ACCGGCGAGTACTCTACGCCT-CAGAAATGTCCACCGTCGCTT 646
|| ||| ||||||||| || || |||||| || ||| || ||||||| |||| |||||
Sbjct 693 GCCGGAGTTCTGCTGCTAC-GGTGAGTACGGTAAACCTGCA-AAATGTCAACCGACGCTT 750
Query 647 TACGCAAAGAATTTCAAGAACGAATGTCCACTCGCTTATAGCTATGTTTATGATGATGCA 706
||| | | ||||||||||||||| |||||||||||||||||||||| |||||| ||| |
Sbjct 751 TACTCTACGAATTTCAAGAACGAGTGTCCACTCGCTTATAGCTATGCTTATGACAATGAA 810
Query 707 ACCAGCACATTCACATGCTCAAACTCACCTAACTACGTCATCACCTTTTGCCC 759
| || ||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 811 AACAACACCTTCAGATGCTCAAACTCACCTAACTATGTCATCACCTTTTGCCC 863
> AT5G38275.1 | Symbols: | pseudogene, similar to SCUTL1, blastp
match of 57% identity and 1.0e-38 P-value to GP|6273383|gb|AAF06346.1|AF195653_1|AF195653
SCUTL1 {Vitis vinifera} | chr5:15290725-15292125
REVERSE LENGTH=1401
Length=1401
Score = 331 bits (179), Expect = 6e-90
Identities = 256/291 (88%), Gaps = 13/291 (4%)
Strand=Plus/Plus
Query 322 CTCTGGAGGCGCAGCGCCTCCAACGACTCTAG-C--T-GAGTTTTCCCTAAACGGTCCCA 377
|||||||||||||||||||||||||||||||| | | |||||| |||| ||| || ||
Sbjct 895 CTCTGGAGGCGCAGCGCCTCCAACGACTCTAGCCGATCGAGTTTACCCTCAACAGTTTCA 954
Query 378 ACGGTCAAGACTTCTATGATGTAAGCCTCGTGGACGGTTACAACCTTCC-----T--TTA 430
|||||||||||||||||||| |||||||||| ||||||||||||||||| | |||
Sbjct 955 ACGGTCAAGACTTCTATGATATAAGCCTCGTAGACGGTTACAACCTTCCGTTAGTGGTTA 1014
Query 431 GTGGTGGTCCCACAACGT-CCGCAGAGTGGCCAGACATGCGTCAGCATTGGTTGCGTGGT 489
|||||||||||||||| | || ||| | ||||| ||||||| ||||| ||||| |||||
Sbjct 1015 GTGGTGGTCCCACAAC-TAACGTAGACTTGCCAGGCATGCGTTAGCATCGGTTGTGTGGT 1073
Query 490 CAACCTGACCAAGACGTGTCCGTCGGAGCTTCAGGTTATGGGAAGCTCCAGCGAGGGAGA 549
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1074 CAATCTGACCAAGACGTGTCTGTCGGAGCTTCAGGTTATGGGAAGCTCCAGCGAGGAAGA 1133
Query 550 GCCAATTGCTTGCATGAACGCTTGTCAGAAATTCAAAACAGCGGAATTCTG 600
|||||| |||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 1134 GCCAATCGCTTGCATGAACGCTTGTCAGAAATTCAAAGCAGTGGAGTTCTG 1184
Score = 313 bits (169), Expect = 2e-84
Identities = 225/251 (90%), Gaps = 7/251 (3%)
Strand=Plus/Plus
Query 78 GAGTAACGTCAAGAAACTTTACTATAGAGAACAAATGCGATTACACTGTCTGGCCGGGAG 137
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 56 GAGTAACGTCAAGAAACTTTAATATAGAGAACAAATGCGATTATACTGTCTGGCCGGGAG 115
Query 138 TTTC-AACCTCAAGT-ACGGTTCCTCTCTCCACCACCGGCTTCGAACTCAAGAAAGGAGA 195
||| || | || |||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 116 -TTCTAA--GC--GTGACGGTTTGGCTCTCAACCACCGGCTTCGAACTCAAGAAAGGACA 170
Query 196 GGCGCGTGTCATCAACGCGCCGTCGTCATGGACTGGTCGTTTCTGGGGTAGGTCTCTCTG 255
| ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||
Sbjct 171 GTCGCGTGTCATCAACGTGCCGTTGTCATGGACTGGTCGTTTTTGGGGTAGGTCTCTCTG 230
Query 256 CTCCACCAGCTCAACAGGGAACTTCTCCTGCGCCACCGGAGATTGTGGCTCCGGAAAAAT 315
|||||||||||||||||||||||||| |||||| || ||||| || || || ||||||||
Sbjct 231 CTCCACCAGCTCAACAGGGAACTTCTTCTGCGCTACGGGAGACTGCGGGTCTGGAAAAAT 290
Query 316 CGAGTGCTCTG 326
|||||||||||
Sbjct 291 CGAGTGCTCTG 301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5