BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948047
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38210.1 | Symbols: | Protein kinase family protein | chr5:... 695 0.0
> AT5G38210.1 | Symbols: | Protein kinase family protein | chr5:15261005-15265630
FORWARD LENGTH=2345
Length=2345
Score = 695 bits (376), Expect = 0.0
Identities = 469/513 (91%), Gaps = 9/513 (2%)
Strand=Plus/Plus
Query 227 TCAATGTCTTATGTACCGTGTTCTCGAAGTAAACATCACAACTAGTACTCTTAAATTAGT 286
|||| |||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 277 TCAA-GTCTGATGTACCGTGTTCTCGAAGTAAATACCACTACTAGTACTCTTAAATTAGT 335
Query 287 AAGGCAAGACTTTTCAGGTCCATTCTGCTCGATTTCATTCAGTGGAGCAATGTTGACTCC 346
||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 336 AAGGCAAGACTTTTCAGGTCCATTCTGCTCGGCTTCATTCAGCGGAGCAACGTTGACTCC 395
Query 347 CGAACTCTTTGAGCTTTTGCCAGACTACAAGACCCTCTCCGCTTACTACCTCTGTAACCC 406
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 396 TGAACTTTTTGAGCTTTTGCCAGACTACAAGACCCTCTCCGCTTACTACCTCTGCAACCC 455
Query 407 TCGTCTTCACTATCCTGCGAATTTCACATGTTCAAATAAGGGTGTTGGCTCGATGA-ATC 465
| ||||||||||||||||||| |||| |||| ||||||||||||||||||| || | |||
Sbjct 456 TAGTCTTCACTATCCTGCGAAATTCATATGTCCAAATAAGGGTGTTGGCTCAAT-ACATC 514
Query 466 AGGATGATTTCAATCACAATCACTGTGGTGGGAGTTTCAACATCACTGTTCCTATAGGTT 525
|||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 515 AGGATGATTTGTATCACAATCACTGTGGTGGGATTTTCAACATCACTGTTCCCATAGGTT 574
Query 526 ATGCCCCAGAGGA-GGAAGGTTTGAATGTAACCAATTTGGAAAGTGTTCTTAAAAAAGGA 584
|||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 575 ATGCTCCAGAGGAAGGA-GCTTTGAATGTAACCAATTTGGAAAGTGTTCTTAAAAAAGGA 633
Query 585 TTCGAGGTGAAACTAAATATTGATGAGAGACCGTGTCGAGAATGTAAATCCACTGGTGGA 644
|| ||||||||||| | || |||||||||||||||| |||||||||| ||| |||||||
Sbjct 634 TTTGAGGTGAAACTTAGCATCGATGAGAGACCGTGTCAAGAATGTAAAACCAATGGTGGA 693
Query 645 ATCTGCTCCTACGATGTTGCAACTCCGGTTTGCTGCAAGACAAACTCGTCATCAGAACTC 704
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 694 ATCTGCGCCTACCATGTTGCAACTCCGGTTTGCTGCAAGACAAACTCGTCATCAGAAGTC 753
Query 705 GAAT-GCA-TCCCAATGATTCCATCAGGATCTA 735
||| ||| ||| |||||| ||||| |||||||
Sbjct 754 -AATTGCACTCC-AATGATGCCATCTGGATCTA 784
Score = 298 bits (161), Expect = 6e-80
Identities = 211/234 (90%), Gaps = 7/234 (3%)
Strand=Plus/Plus
Query 1 AAACTA--TT-CAGAGATCAATCATGTTCTCTCCATTACTCTTCAGATTCTCAAAACCCA 57
|||||| || |||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 8 AAACTACTTTCCAGATATCAATCATGTTCTCTCCAGTACTCTTCAGATTCTCAAAACCTA 67
Query 58 ATT-TTTGTCTAGTCTTTCTCTTGTTCTTGTCCTTCT-TTAACTGTCTTCCTTGTGCTCT 115
||| ||| ||| ||| ||||||| ||||| ||| | | || ||| ||||||||||||||
Sbjct 68 ATTCTTT-TCTGGTCCTTCTCTTCTTCTTATCC-TATATTCACTTTCTTCCTTGTGCTCA 125
Query 116 AAGTCAACGAGAACCATGTGATACTCTGTTTCGTTGCGGGAATCTCACAGCCGGTTTCCC 175
||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 126 AAGTCAACGAGAACCATGTGACACTCTGTTTCGTTGTGGGGATCTCACAGCCGGTTTCCC 185
Query 176 TTTCTGGGGAGTGGCTCGGCCTCAACCTTGTGGTCATCCATCTTTAGGGCTTCA 229
||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 186 TTTCTGGGGAGTGGCTCGGCCCCAACCTTGTGGTCATCCATCTTTAGGACTTCA 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38630059043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5