BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948049

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38230.1 | Symbols:  | transposable element gene | chr5:1527...   333    8e-91


> AT5G38230.1 | Symbols:  | transposable element gene | chr5:15274326-15276766 
FORWARD LENGTH=2441
Length=2441

 Score =  333 bits (180),  Expect = 8e-91
 Identities = 271/314 (86%), Gaps = 9/314 (3%)
 Strand=Plus/Plus

Query  23   ATGATTTCCATCGAGGGGATGAGTATTCTTGATGCGATCTTTCACATCAAGAACGAAATA  82
            ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct  1    ATGATTTCCATAGAGGGTATGAGTATTCTTGATGCGATCTTTCACATCAAGAACCAAATA  60

Query  83   AACATTCTCCAGAAAGAAATCGATTCATCAGGCCAC-CTAGAAGCAAAAATCCCACTCAT  141
            |||||| ||||||||||||||||||||| ||||||| |  ||||||||  ||||| |  |
Sbjct  61   AACATTGTCCAGAAAGAAATCGATTCATTAGGCCACGCG-GAAGCAAAGTTCCCAATG-T  118

Query  142  -TATGGCTTTGGTCAGTGATGAAAAATCCAAGCTGCAACAAGAGCTCGATGATCAGGAAA  200
             |||| ||||  ||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct  119  CTATGTCTTTTCTCAGTGAAGCAAAATCCAAGCTGCAACAAGAGCTCAATGATCAGGAAA  178

Query  201  ACAAGGCGAGACAGATTTGCAAAGACCTCGGACTTTCTACTACGGAAGACTTCCCAATGC  260
            ||||||||||||||  |||||| ||| |||||||| |||||| |||||||||| ||||||
Sbjct  179  ACAAGGCGAGACAGGCTTGCAAGGACATCGGACTTACTACTAGGGAAGACTTCACAATGC  238

Query  261  TTTGCGAG--GTTCTCGGAATTTCTCCTACGAAAGAGTACCTAGCAGCAGTGTTCGAGCC  318
            ||||| ||  ||  |||||||| | | || ||||||||||||||||  | || || ||||
Sbjct  239  TTTGCAAGAAGTGGTCGGAATTCCACATAGGAAAGAGTACCTAGCA--A-TGCTCAAGCC  295

Query  319  ATACATGTCTGCTT  332
             ||||||| |||||
Sbjct  296  GTACATGTTTGCTT  309



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5