BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948060
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54140.1 | Symbols: ILL3 | IAA-leucine-resistant (ILR1)-like... 278 3e-74
> AT5G54140.1 | Symbols: ILL3 | IAA-leucine-resistant (ILR1)-like
3 | chr5:21965833-21968061 FORWARD LENGTH=1514
Length=1514
Score = 278 bits (150), Expect = 3e-74
Identities = 187/205 (91%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 107 TGAAGGACAAGCTGATGTACATAGATGCAAAATGGATATAGATGTGCATGAAGACGATCA 166
||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 906 TGAAGGACAAGCTGAAGTACAAAGATGCAAAGCGGATATAGATATGCATGAAGACGATCA 965
Query 167 TCCTATGTATCCAGCAACACTGAACGATCCCAAGCTACACGAATACGCTGAAAATGTTTT 226
||||||||||||||||||| ||||||||| |||||||||||||| | ||||||| |||||
Sbjct 966 TCCTATGTATCCAGCAACAGTGAACGATCACAAGCTACACGAATTCACTGAAAAGGTTTT 1025
Query 227 AAAACTCTTGCTTGGACCCGAGAAAGTAAAACCGTG-TGGCAAGGTAATGGCGGGTGAGG 285
||||||||||||||||||||||| || |||||| | | ||||||||||||||||||||
Sbjct 1026 GAAACTCTTGCTTGGACCCGAGAAGGTGAAACCG-GCTAACAAGGTAATGGCGGGTGAGG 1084
Query 286 ATTTTGCTTTCTATCAACAATAAAT 310
|||||||||||||||||||| ||||
Sbjct 1085 ATTTTGCTTTCTATCAACAAAAAAT 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15281395696
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5