BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948061
Length=329
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38195.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 442 1e-123
AT5G38180.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 374 4e-103
> AT5G38195.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr5:15246910-15247329
FORWARD LENGTH=420
Length=420
Score = 442 bits (239), Expect = 1e-123
Identities = 293/319 (92%), Gaps = 4/319 (1%)
Strand=Plus/Plus
Query 2 AATCATCAAAGTTTCAAGACATGAAGTTCATGACACTAATGATCATCACATTTGTGATAG 61
||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 62 AATCATCAAAGTTTCAAGACATGAAGTTCATGAAACTAATGGTCATCACAGTTGTGATAG 121
Query 62 TCATCATGTCATCTTCTATTTTGATCAAAGCAGAAGAGGCA-CAGTCATGTGTTCCAACA 120
|| ||||||||||| |||||||||||||| |||||| | || | ||||||| ||||||||
Sbjct 122 TCGTCATGTCATCTCCTATTTTGATCAAATCAGAAGTGTCATC-GTCATGTATTCCAACA 180
Query 121 GATCTCATGCCATGCTTACCGGCAATGACTACAGGAGGACAACCGGCTAAAGATTGTTGC 180
|| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 181 GAACTCATGCCATGCTTACCGGCAATGACCACAGGAGGACAACCAACTAAAGATTGTTGC 240
Query 181 GACAAACTGATTGAGCAAAAATCATGTTTATGTGGTTACATTAAAAA-CCCATTATATAG 239
|||||||||||||||||||| ||||||||||||||||||||| || ||| ||||| ||
Sbjct 241 GACAAACTGATTGAGCAAAAGGAATGTTTATGTGGTTACATTAACAATCCC-TTATACAG 299
Query 240 TATGTTTGTTAGCTCTCCACTTGCTCGCAAAGTTTTAGAAGCTTGTAATATTCCTTATCC 299
|| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 TACGTTTGTTAGCTCTCCAGTTGCTCGCAAAGTTTTAGAAGTTTGTAATATTCCTTATCC 359
Query 300 TAGTTGTTAAATCTCAATA 318
||||||||||| |||||||
Sbjct 360 TAGTTGTTAAAGCTCAATA 378
> AT5G38180.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr5:15229810-15230243
FORWARD LENGTH=434
Length=434
Score = 374 bits (202), Expect = 4e-103
Identities = 282/320 (88%), Gaps = 8/320 (3%)
Strand=Plus/Plus
Query 4 TCATCAAAGTTTCAAGACATGAAGTTCATGACACTAATGATCATCACATTTGTGA-TAGT 62
|||||| | ||| |||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 29 TCATCAGATTTTGAAGACATGAAGTTCATGACACTAATGGTCATCACATTTGTGATTA-T 87
Query 63 CATCATGTCATCTTCTATTTTGATCAAAGCAGAAGAGGCACAGTCATGTGTTCCAACAGA 122
| || |||||||| |||||||||| |||||||||||| |||||||||||||||| | ||
Sbjct 88 CGTCCTGTCATCTCCTATTTTGATGAAAGCAGAAGAGACACAGTCATGTGTTCCGATGGA 147
Query 123 TCTCATGCCATGCTTACCGGCAATGACTACAGGAGGACAACCGGCTAAAGATTGTTGCGA 182
||||||||||||||||| |||||||| | | ||| ||||||| ||||||||||||||||
Sbjct 148 GCTCATGCCATGCTTACCTGCAATGACCAAAAGAGAACAACCGACTAAAGATTGTTGCGA 207
Query 183 CAAA-CTGATTGAGCAAAA-ATCATGTTTATGTGGTTACATTAAAAACCCATTATATAGT 240
||| |||||| ||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 208 -AAATCTGATTAAGCAAAAGA-CATGTTTATGTGATTACATTAAAAACCCATTATATAGT 265
Query 241 ATGTTTGTTAGCTCTCCACTTGCTCGCAAAGTTTTAGA-AGCTTGTAATATTCCTTATCC 299
|||||| || ||||| | | ||||||||||||||||| | |||||||| |||||||| |
Sbjct 266 ATGTTTACTATCTCTCTAGTCGCTCGCAAAGTTTTAGAGA-CTTGTAATGTTCCTTATAC 324
Query 300 TAGTTGTTAAATCTCAATAT 319
||||||||||| ||||||||
Sbjct 325 TAGTTGTTAAAGCTCAATAT 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15331663445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5