BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948062

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38170.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   337    5e-92


> AT5G38170.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr5:15227638-15228081 
FORWARD LENGTH=444
Length=444

 Score =  337 bits (182),  Expect = 5e-92
 Identities = 305/362 (84%), Gaps = 18/362 (5%)
 Strand=Plus/Plus

Query  1    GTTGCTAGGGTTTTGAAGATATGAAGTTCACGACATTTGTGTTCATTGTGTTCGTGGTAG  60
            ||| |||| | |||||||| |||||||||||| |  |||||||||||||||||||||| |
Sbjct  61   GTTCCTAGAG-TTTGAAGACATGAAGTTCACGGCGCTTGTGTTCATTGTGTTCGTGGTGG  119

Query  61   GTGCCAT-GTTATCTCCAGTTCCAGTCAGAGCAAGAGTGGTGGAAAGTTT-TAAAGAAGA  118
            ||| ||| ||| ||||||||| || |||||||||  | |||  ||| ||| |  || |||
Sbjct  120  GTGTCATGGTT-TCTCCAGTTTCAATCAGAGCAACTGAGGT-CAAACTTTCTGGAGGAGA  177

Query  119  AG-TAAATGTAACGTGTGATGCTAAT-GAGCTTAGTTCATGC-TTACTGCC-ATTCACCA  174
            || |  |||||||||||||||| | |  ||||||||||||||   ||  || || |  ||
Sbjct  178  AGCT-GATGTAACGTGTGATGC-AGTACAGCTTAGTTCATGCGCAAC-ACCAATGC-TCA  233

Query  175  CAGGAGTATCACCGTCAACA-ACTTGTTGCACAAAACTAAAGGAGCAACAGCCGTGTTTT  233
            |||||||| ||||||| ||| |  ||||||   ||||| |||||||||||||||||||||
Sbjct  234  CAGGAGTACCACCGTCTACAGA-GTGTTGCGGGAAACTGAAGGAGCAACAGCCGTGTTTT  292

Query  234  TGTACATATATTAAAGATCCAAAATATAGTCAATATGTTGGTACTCCAAACGCTAAGAAA  293
            |||||||||||||||||||||| ||||||||||||||||||| || |||| |||||||||
Sbjct  293  TGTACATATATTAAAGATCCAAGATATAGTCAATATGTTGGTTCTGCAAATGCTAAGAAA  352

Query  294  ACGTTAGCAACTTGTGGTGTTCCTTATCCTACTACTTGTTGAAGTTTGAGATATTGCTAA  353
            |||||||||||||||||||||||||||||||||  | |||||  ||||||||||||||||
Sbjct  353  ACGTTAGCAACTTGTGGTGTTCCTTATCCTACT--T-GTTGATTTTTGAGATATTGCTAA  409

Query  354  AA  355
            ||
Sbjct  410  AA  411



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16638624919


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5