BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948082

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38050.1 | Symbols:  | RNA polymerase II transcription elong...   289    9e-78


> AT5G38050.1 | Symbols:  | RNA polymerase II transcription elongation 
factor | chr5:15187519-15188783 FORWARD LENGTH=1063
Length=1063

 Score =  289 bits (156),  Expect = 9e-78
 Identities = 186/200 (93%), Gaps = 3/200 (2%)
 Strand=Plus/Plus

Query  1    TTTTG-AAATTGGATGAAGAAGAAATGGACAAGAACAATGAAGAGCCAAGAATCGCACCA  59
            ||||| ||||| ||||||||||||||||||||  |||||||||| |||| ||||||||||
Sbjct  50   TTTTGAAAATTTGATGAAGAAGAAATGGACAATCACAATGAAGAACCAAAAATCGCACCA  109

Query  60   GAACCTAATCGTTGGTACAATATTACGTTAGGACCATCACTACTCAACAACAATCACTCA  119
            |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct  110  GAACCTAATCGTTGGTACAACATTACGTTAGGACCAACACTACTCAACAACAATCACTCA  169

Query  120  TACTCTCCCAAATTCTGCACTTTACGATATGAGTTTAAACCGGCGTCAATTGAT-GATAC  178
            ||||||||||||||||||||||||||||||||||||||||| || ||||||||  | |||
Sbjct  170  TACTCTCCCAAATTCTGCACTTTACGATATGAGTTTAAACCTGCTTCAATTGACAG-TAC  228

Query  179  TAAACCGGGATTGTTACATa  198
            |||||| |||||||||||||
Sbjct  229  TAAACCAGGATTGTTACATA  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10003282051


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5